Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05270 228 / 5e-76 Chalcone-flavanone isomerase family protein (.1.2) AT1G53520 58 / 7e-10 Chalcone-flavanone isomerase family protein (.1) AT5G66230 52 / 1e-07 Chalcone-flavanone isomerase family protein (.1.2) AT3G55120 51 / 1e-07 A11, CFI, TT5 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) AT5G66220 44 / 3e-05 Chalcone-flavanone isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030529 [exp] 303 / 1e-105 AT5G05270 222 / 2e-74 Chalcone-flavanone isomerase family protein (.1.2) Lus10003311 [exp] 71 / 2e-14 AT3G55120 274 / 8e-94 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Lus10030310 [exp] 69 / 4e-14 AT3G55120 270 / 5e-92 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Lus10026174 [exp] 64 / 2e-11 AT1G53520 259 / 3e-84 Chalcone-flavanone isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G057800 [exp] 242 / 2e-81 AT5G05270 270 / 6e-93 Chalcone-flavanone isomerase family protein (.1.2) Potri.010G213000 [exp] 72 / 6e-15 AT3G55120 300 / 1e-103 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Potri.011G101800 [exp] 69 / 8e-14 AT1G53520 282 / 4e-95 Chalcone-flavanone isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0560 [flax] [poplar] Chalcone-like PF02431 [flax] [poplar] Chalcone Chalcone-flavanone isomerase
Representative CDS sequence Show only first row Show all	>Lus10012878 pacid=23162993 polypeptide=Lus10012878 locus=Lus10012878.g ID=Lus10012878.BGIv1.0 annot-version=v1.0 ATGGACAGCTCTGTTATCGAATCAAAAATAATAATCGACGATGAAATCACTCTCCCATCCTTATTCACGTCTACTGACAAATCCTTACCCTTAATCGCAC ACGGAATCACGGACATCGAGATACATTTCCTCCAGATCAAGTTCACGGCGATAGGACTCTACCTCGACGCAAACGACGTTGTCCAGCACCTCCAAACCTG GAAGGGAAAATCGGGGAAGGAGCTCGAATCAAACGACGACCTCTTCGACGCGGTAGCAACTTCCCCGGCGGAGAAGCTCATCCGCGTGGTGGTCATCAAG GAGATCAAGGGGTCGCAGTACGGCGTCCAGCTGGAGAGCGCGGTGAGGGACCGGCTAGCGGGGGAGGACAAGTACGAGGAGGAAGAAGAATCGGAGCTCG AGAGAGTCACGGATTTCTTCCAGTCGAAGTATTTCAAGAAGGGATCCGTCGTCACTTTCCATTTCCCGGCGGCGGGAGGGAAGCTGGAGATCGGGGTCGC GGTGGAAGGGAAAGAGGAGGCGAAATTGGCGGTGGAGAATTTGAATGTTGTTGAGACGATTAAGAAGTGGTATTTGGGAGGGACGAGGGGTGTTTCTCCG ACGTTGATTTCGTCGCTGGCCGGTGGTTTGGCTGAGGTCTGGCCGGTGCTCTGGCTGAGCTTCTGGCGAAATGAGCAGCGGTGGTGTTACGGAGTTTATT GGTAG
AA sequence Show only first row Show all	>Lus10012878 pacid=23162993 polypeptide=Lus10012878 locus=Lus10012878.g ID=Lus10012878.BGIv1.0 annot-version=v1.0 MDSSVIESKIIIDDEITLPSLFTSTDKSLPLIAHGITDIEIHFLQIKFTAIGLYLDANDVVQHLQTWKGKSGKELESNDDLFDAVATSPAEKLIRVVVIK EIKGSQYGVQLESAVRDRLAGEDKYEEEEESELERVTDFFQSKYFKKGSVVTFHFPAAGGKLEIGVAVEGKEEAKLAVENLNVVETIKKWYLGGTRGVSP TLISSLAGGLAEVWPVLWLSFWRNEQRWCYGVYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05270			Chalcone-flavanone isomerase f...		Lus10012878 [exp]	0	1
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10022909 [exp]	2.4	0.8064
AT2G36885			unknown protein		Lus10013829 [exp]	3.3	0.8269
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005878 [exp]	10.7	0.7606
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10016855 [exp]	15.3	0.7377
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10034647 [exp]	25.1	0.7448
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	32.1	0.7320
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	39.9	0.6794
AT2G36885			unknown protein		Lus10026542 [exp]	40.5	0.7107
AT5G05270			Chalcone-flavanone isomerase f...		Lus10030529 [exp]	40.9	0.7289
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	42.8	0.7150

Compare expression of checked genes

Lus10012878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.