Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26310 367 / 1e-121 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26300 366 / 2e-121 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26330 363 / 2e-120 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26320 356 / 2e-117 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT5G25140 355 / 4e-117 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G48310 349 / 6e-115 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G26210 346 / 9e-114 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G26290 345 / 5e-113 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT1G13080 343 / 2e-112 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT5G25120 342 / 3e-112 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031674 [exp] 709 / 0 AT3G26300 399 / 3e-134 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10030530 [exp] 585 / 0 AT3G48310 191 / 1e-56 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10039063 [exp] 561 / 0 AT3G26300 392 / 3e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10038796 [exp] 517 / 2e-180 AT3G26300 364 / 5e-121 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016601 [exp] 466 / 2e-160 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10009903 [exp] 442 / 7e-151 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10013194 [exp] 434 / 1e-147 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10030708 [exp] 431 / 1e-146 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10030924 [exp] 431 / 2e-146 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 472 / 1e-162 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 441 / 2e-150 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 437 / 5e-149 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 436 / 2e-148 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 426 / 1e-144 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 423 / 1e-143 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 422 / 3e-143 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 421 / 7e-143 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 418 / 1e-141 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.012G090000 [exp] 410 / 2e-138 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10012879 pacid=23163027 polypeptide=Lus10012879 locus=Lus10012879.g ID=Lus10012879.BGIv1.0 annot-version=v1.0 ATGGCCTTCTCTGCTTCACTCACATTCACCGCCCCCAAACCAACATCCTCCGCCGCCGCCGTCCCAACATTCCGGCCAATATTCTCCAGCAATCTCCCTT CCCGCCGCCGCCTTCCCGCCAAAATCCGCTGCCAGAAAAAATCGCTCCCTCCGGGCCCACCTAAGCTTCCCATAATCGGAAACCTCCACAACATGATCGG ATCCCTCCCGCACCAAGCCCTCCGCGACTTAGCCATCCAATACGGCCCCTTGATACACCTCCAGCTAGGAGAAATCTCCGCCGCCGTGGTATCCAACCCG GCGATGGCGCAGGAGATCATGAAAATGCACGACCTAGTCTTCGCCGACCGGCCGAGACTCCTCGCATCGGAGATCGTCACGTGGGGGAGCCAGGACATCG CCTTCTCCCCTCACGGCGAGTACTGGAAGCAGATGAAGCGGATTTCTCTCACCGAACTTTTGGGCCCAAGGAAGGTGAAATCTTTCCGGGCGATTCGTGA ATCGGAGGTTTCCGATCTGATCGAATCTGTCAGGAAAATTTCGATTTCGAATAAGGCGGTGAATATTTCCGAGATGGTGATGAATGTTACCAACGCGATT ACCTGTAAGACGGCGTTTGGTTACCAGTGTACCGATCAGGACGAGTTCATCGGATTGACTAAAGAGGCCGTGTCGGCAGCGGCTGGATTTGGGATCACCG ATGTTTATCCGTCGCTGGAATTTCTTCAGGGGATTACAGGGGTGAAGAATAAGTTGCTGAGGTTGAGGAACGGGCTTGATCGGATCTTCGATAAGATCAT CAAGGAGCACAAGGACAAAATGGTCAATCGTGGAGGACTTGAATCCGAAGATGATGAGGATTTAATGGATATTCTGTTGAGAATTCAGGGGAGTAAGAGC TTGAAATGTCCGATTACAAGCACAAACATCAAAGCAGTCCTGGTGGATTTATTCATCGCCGGGACAGACACGTCATCGACGACGGTGGAATGGGCCATGT CGGAGATGATGAAGAACCCAACCGTAATGAAGAAGGCACAGGAGGAGGTGAGAAATTGCGCCAAGGGGAAGCAATCAATCAATGAAGACGACATCAAGGA CTTGCCTTACTTGAGCGCGGTGATCAAGGAAACGTTCAGGCTACACCCGCCGGCGCCGCTGCTTTTGCCGAGGGAGAGCAAAGCGGACTGCGTGGTGGCG GGGTACGTGATTCCAAAGAAGACAAAGGTGATCGTGAATGCGTGGGCCATAGGGAGGGATCCGGGTACGTGGAAGGACCCCGAGAGGTTCTTGCCGGAGC GATTTGACGGGAGTGAGATCGACTTCAAAGGAATGCATTTCGAGCTTATCCCTTTCGGTGCTGGTAGGAGGATATGTCCTGGGATTGCGTTCGGGATGGC AAATGTTGAGCTTCCCGTGGCGCAGTTGTTGTACCATTTTGATTGGGAGCTGCCGAATGGGGTAGGGGTTGAGGATTTCGATATGACAGAGGATTTCGCA GCAACGATGGGGAGGAAGAATCCGTTGTGGTTGGTTCCTAGGGTTCATCGTTTTTCCAATGTGAGACCGAGAGGCCATGAAGAAGAGCAGATGATTAGTA CCGTAATGTAA
AA sequence Show only first row Show all	>Lus10012879 pacid=23163027 polypeptide=Lus10012879 locus=Lus10012879.g ID=Lus10012879.BGIv1.0 annot-version=v1.0 MAFSASLTFTAPKPTSSAAAVPTFRPIFSSNLPSRRRLPAKIRCQKKSLPPGPPKLPIIGNLHNMIGSLPHQALRDLAIQYGPLIHLQLGEISAAVVSNP AMAQEIMKMHDLVFADRPRLLASEIVTWGSQDIAFSPHGEYWKQMKRISLTELLGPRKVKSFRAIRESEVSDLIESVRKISISNKAVNISEMVMNVTNAI TCKTAFGYQCTDQDEFIGLTKEAVSAAAGFGITDVYPSLEFLQGITGVKNKLLRLRNGLDRIFDKIIKEHKDKMVNRGGLESEDDEDLMDILLRIQGSKS LKCPITSTNIKAVLVDLFIAGTDTSSTTVEWAMSEMMKNPTVMKKAQEEVRNCAKGKQSINEDDIKDLPYLSAVIKETFRLHPPAPLLLPRESKADCVVA GYVIPKKTKVIVNAWAIGRDPGTWKDPERFLPERFDGSEIDFKGMHFELIPFGAGRRICPGIAFGMANVELPVAQLLYHFDWELPNGVGVEDFDMTEDFA ATMGRKNPLWLVPRVHRFSNVRPRGHEEEQMISTVM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10012879 [exp]	0	1
AT3G07310			Protein of unknown function (D...		Lus10002343 [exp]	1.0	0.9987
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10034230 [exp]	1.7	0.9958
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025902 [exp]	2.4	0.9959
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10002357 [exp]	3.5	0.9958
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	4.9	0.9949
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	5.0	0.9949
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10019460 [exp]	5.9	0.9947
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10030531 [exp]	6.3	0.9942
					Lus10032178 [exp]	6.7	0.9945
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10004154 [exp]	6.7	0.9930

Compare expression of checked genes

Lus10012879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.