Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 639 / 0 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 229 / 1e-63 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G02780 219 / 2e-60 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16740 134 / 9e-33 ATTPS03 terpene synthase 03 (.1.2) AT4G16730 130 / 1e-31 AtTPS02 terpene synthase 02 (.1) AT3G29410 122 / 8e-29 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 120 / 4e-28 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 113 / 7e-26 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G24210 111 / 3e-25 AtTPS10 terpene synthase 10 (.1) AT3G32030 111 / 3e-25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014673 [exp] 922 / 0 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 896 / 0 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034229 [exp] 830 / 0 AT1G79460 583 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006923 [exp] 788 / 0 AT1G79460 538 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 779 / 0 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 775 / 0 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034232 [exp] 754 / 0 AT1G79460 569 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 683 / 0 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 459 / 7e-149 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082700 [exp] 737 / 0 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 733 / 0 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 263 / 5e-76 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.002G052100 [exp] 214 / 9e-59 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 205 / 1e-55 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.015G085500 [exp] 157 / 1e-40 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 155 / 8e-40 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 151 / 2e-38 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.007G118600 [exp] 144 / 8e-36 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 137 / 2e-33 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10012880 pacid=23163003 polypeptide=Lus10012880 locus=Lus10012880.g ID=Lus10012880.BGIv1.0 annot-version=v1.0 ATGTCTGATATGGTGGCGGTAAGCTGGACGACGAGACAGACTGATTTCGACACTAACTCGGTTATGTTGATCAAATTCGACAAGAGCTTTGACGACCCGA CGAAGGCGAGGATCAAGAAGCTGTTCGACAAAGCGGAGCTATCAGCGTCCTCGTACGACACCGCATGGGTAGCCATGGTTCCAGCTACTTCTTCTTCTTC ATCTCAAGTTCCTTACTTCTCTGGTTGTGTCAACTGGTTACTTGAGAATCAACAAAAAGATGGATCTTGGGGTTTGCCCATTGACAACAGAGATCCTTTG TTGATGAAAGACACTCTCTCTTCGACTTTGGCTTCCGTTCTTGCCCTCAAGAAGTGGAATGTCGGTGACCAATACATTCAGAACGCTCTCGGGTTCATGG AGCGGAATTCGGGCTCGCTCACCGACCCGGCCCAAGAAACCCCCATCGGATTCGAAGTCATTTTTCCCGCCATGATTCAAATGTGCGCTCAAGATTTCAA TTTGAATCTCCCGCTAAACCAATCAAACGTCGACGTTCTGCTCCGCGGCCGAGAATCGGCGCTCAACTCCGCGACTCTTCTCCAATCAGAAGGAAGCTGC GCTTATTTGGCTTACGTCTCCGAAGGAATCGGAAACTCTCTCAATCGTCGACACTGGGAAACGGCGAAGAAATTCCAGAGGAAGAACGGCTCATTCTTCA ACTCGCCGTCCGCCACCGCCGCCGCTTTCATCCACCTCCGCGACGCCGATTCTCTCCGCTACCTCCGGTCAGTCGTCGACGCCACCTCATCGCGAAATAC CGCTGCTTCAGTTCCAGCGATTTATCCCAATGGAATCTACTCTCGGCTGTGCCTGATCGATTCGATTGAGAGTTTGGGGATCGATCGACTTTTCCGCCAA GAGATTAAGCTCGCGTTGGATGAGATTTACAACTGCTGGCAGCTGGGAGATGAAGAAATATTCCTCGACAGCAGTACTTGTGCCATGGCGTTTCGGATAC TTCGCCTCAACAGATATCCGGTCTCTCCAGATGTGTTCAATCGGTTCGCAGAAGACCGATTTTGGAATGATACAATGGAAGGGTATTTGAAGGACGAGAG AGCTGTGCTGGAGTTGCACAAAGCTGCACAAGTTATATATCCTGATGAACCAATTCTCGAGCATCAACAATCCTGGACGAGTCAATTCTTGACGAGACAA CACGAATCATCATCACAGACACATGTAAATACCATGTCTAGAGCTAGTAAATACATTTCCACACAAGTGAACGATGTGCTCGAAAATCCATTCAAGGCGG ATTTGGAGAGGTTAACTCACAGAAGGAACATTGAACAATACTGTACAGATAACACCAGAACTATGAAATCCTCCTTCAGTTCTTCGAGCTTTGGGAGCGA AGACTTGTTAACATTAGCCGTGGAGGACTTCAACTTCTGTCAGTCGATGCACCAGAAAGAACTCGGTCAACTAATGAGCTGGCTAAAAGAATACAAGTTG GACGACATGAGGTTGGCCAAGGTGAAGATGGGGTACTGTTACTTCTCAGCTGCATCGACTTATTTTGATCCGGAGCTCTCCCATGCCCGAATCTCATGGG CCAAGCACAGTCTTCTCACCTCTCTAATTGATGACTTCTATGACATCTTCGGGACCGCTGAGGAGCATGTTAACCTGCTCGAGCATTTCGAGAGGTGGGA TGTAAATGGTCCAAGGGGAGAGTTCTGTTCAGAGGAAGTCGAGACATTCTACTGGGCAATCCACTGCGCCATTTGCGAGACTGTGGAGAATGCATATGCT TGGCAAGGGCGTAGCATCATGGACCATGTCGTCGAGCTATGGGTGGATGTGTTGAGAACAATGCTGGAAGAAGCAGAATGGTCAAGAACAAACACGCTGC CATCGCTCGACGAATACATGCGAAACGGATACGTTTCTTTCGCCTTAGGACCCATCGTGGTTCCTTCTCTGTACATGGTTGGACCTCAGATCACTGATGA AGTCGCCAGGGGTCCGGAAGTCCATCGTCTTTTCGAACTCATGAGCACCTGCGGCCGCCTGTTGAATGATTGCCGAAGCTTTCAGAGAGAGGCCGAGGAA GGGATTTCGAACGCGGTGTCGTTGAGGATGGGCCAAGGGATCGGAACAGCGGAGGAAGCGATCGAAGAGATCAAGGAGTTGATCGACGAGCAGACGAAAG AGCTGTTGATGCTGGTTTTGGATGAAAGGAAAGTCAGCAGAGTTCCAAAGGAATGCAGGGAGTTGTTCTGGAAGATGAACAAAGTGTTGCATTTGGTTTA CAAGAAGGAAGACACTTACAATTCTTTGAAGCTGGTTCAAGTTGCTGAGTCTGTGATTAAGGAACCCATCTCCCTTTGTGTTCCATCAACTCATATGTAA
AA sequence Show only first row Show all	>Lus10012880 pacid=23163003 polypeptide=Lus10012880 locus=Lus10012880.g ID=Lus10012880.BGIv1.0 annot-version=v1.0 MSDMVAVSWTTRQTDFDTNSVMLIKFDKSFDDPTKARIKKLFDKAELSASSYDTAWVAMVPATSSSSSQVPYFSGCVNWLLENQQKDGSWGLPIDNRDPL LMKDTLSSTLASVLALKKWNVGDQYIQNALGFMERNSGSLTDPAQETPIGFEVIFPAMIQMCAQDFNLNLPLNQSNVDVLLRGRESALNSATLLQSEGSC AYLAYVSEGIGNSLNRRHWETAKKFQRKNGSFFNSPSATAAAFIHLRDADSLRYLRSVVDATSSRNTAASVPAIYPNGIYSRLCLIDSIESLGIDRLFRQ EIKLALDEIYNCWQLGDEEIFLDSSTCAMAFRILRLNRYPVSPDVFNRFAEDRFWNDTMEGYLKDERAVLELHKAAQVIYPDEPILEHQQSWTSQFLTRQ HESSSQTHVNTMSRASKYISTQVNDVLENPFKADLERLTHRRNIEQYCTDNTRTMKSSFSSSSFGSEDLLTLAVEDFNFCQSMHQKELGQLMSWLKEYKL DDMRLAKVKMGYCYFSAASTYFDPELSHARISWAKHSLLTSLIDDFYDIFGTAEEHVNLLEHFERWDVNGPRGEFCSEEVETFYWAIHCAICETVENAYA WQGRSIMDHVVELWVDVLRTMLEEAEWSRTNTLPSLDEYMRNGYVSFALGPIVVPSLYMVGPQITDEVARGPEVHRLFELMSTCGRLLNDCRSFQREAEE GISNAVSLRMGQGIGTAEEAIEEIKELIDEQTKELLMLVLDERKVSRVPKECRELFWKMNKVLHLVYKKEDTYNSLKLVQVAESVIKEPISLCVPSTHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10012880 [exp]	0	1
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10002807 [exp]	5.6	0.7826
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10030779 [exp]	6.3	0.8043
AT4G27450			Aluminium induced protein with...		Lus10034883 [exp]	7.1	0.8658
AT5G51160			Ankyrin repeat family protein ...		Lus10034255 [exp]	7.7	0.8346
AT2G41480			Peroxidase superfamily protein...		Lus10012684 [exp]	21.4	0.8621
AT1G78860			D-mannose binding lectin prote...		Lus10022495 [exp]	21.4	0.8498
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10019462 [exp]	25.0	0.8408
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10041546 [exp]	25.9	0.8329
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10022015 [exp]	32.2	0.8153
					Lus10029825 [exp]	37.5	0.8068

Compare expression of checked genes

Lus10012880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.