Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40620 256 / 8e-83 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 190 / 2e-57 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT1G06070 165 / 5e-47 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G31370 161 / 6e-46 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT4G38900 161 / 1e-44 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G43700 147 / 4e-41 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT2G21230 148 / 7e-40 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G42380 87 / 5e-19 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT3G58120 84 / 6e-18 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12900 82 / 2e-17 bZIP AtbZIP33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030531 [exp] 541 / 0 AT2G40620 286 / 4e-93 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10042211 [exp] 237 / 4e-75 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10009907 [exp] 235 / 4e-75 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2) Lus10008605 [exp] 232 / 2e-73 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10024204 [exp] 231 / 2e-73 AT1G06850 271 / 5e-90 basic leucine-zipper 52 (.1.2) Lus10018899 [exp] 177 / 2e-52 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10028595 [exp] 175 / 9e-52 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10018061 [exp] 164 / 1e-45 AT4G38900 529 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10042057 [exp] 164 / 1e-45 AT4G38900 522 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G091400 [exp] 255 / 1e-82 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.019G130000 [exp] 235 / 2e-74 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G156900 [exp] 231 / 9e-73 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G069500 [exp] 178 / 1e-52 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.005G190700 [exp] 174 / 1e-51 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.017G027400 [exp] 166 / 3e-47 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G130800 [exp] 162 / 8e-46 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.004G163800 [exp] 162 / 2e-44 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.009G125400 [exp] 160 / 6e-44 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.013G124400 [exp] 86 / 2e-18 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10012881 pacid=23163062 polypeptide=Lus10012881 locus=Lus10012881.g ID=Lus10012881.BGIv1.0 annot-version=v1.0 ATGCAGGATGATACCAATCCAAATCCAAATACCACGGCGTCGCCAAACGCCAACGGCGGCGATTCCCAAACCCCCAGGGGATCCTTCCACCGTCGGGCAT TCTCCGAGTTCGAATTCCGCATCCCGGACGACCTAGATCTCGACCCGCTCGACGCCCCCTCGGTGACTTCATTCGACGAGCTCGGATCTGAGGATGACCT TTTCTACACGTACATGGACATGGAAGGAGGAAGCCTCGGATCCAAACCCGACGACATTGATCAGAAAATCGCCGGCAAAGTTGGAATCGACGACGCGGCG GCGAATCCAAGTTTGAGCGGCGGAGTCGGAGGAAACACGGGCGCGAAGGGGAAGCACAGGCATAGCAATTCGGTGGATGGCTCTTCATTTGTGCAGTCGG TTGAAGCTAAGAAAGCAATGGGTCCTGATAAGCTTGCTGAACTCTGGAACATGGATCCCAAACGAGCCAAAAGGATCATTGCGAATCGGCAGTCTGCAGC AAGATCGAAGGAGAGGAAAGCTCGTTATATATTAGAACTGGAGAGGAAAGTGCAGAATCTTCAGGCAGAAGCAGCTACTCTCGGTGCACAACTCACATTA TTCCAGAGAGATACATTGGGTCTGACTAACGAGAACGCGAACCTGAAGCTTCGGGTGCAGGCCATGGAACAGCAGGCTCAGCTACGTGAAGCTGTAAACG ATGCACTGAAAAAGGAAGTAGAGATGCTGAAGATAGCTATGGGCGAAAGAACGGCGCAACAACAACTCGAATATCCCTACAACATGGGAATGCACCATCA ACATCATCATCTCTCTTACAACCATCCTCCTTTCTTCCCACTCCATCAGCAACAACCTGGAAATATCATGTATAACCCTCACAGCATCCAAGTCCCACAG TTCCACCCTTTCCAGCCTAATAATAACCTCCCGAATTCGTGCCACCTCCCAACTGTAGCTGCTGCTCTCCCCAATCATCACGGCCGTGGATTTCCAGAGA TGTTGCCGCACGAGAGACTCCAAGGACTCGACATCAGTGGTGGAGGAGGAAGAAGCTACGTTGTGGTGAAATCTGAAGGACCCTCCATTTCCGCCAGTGA GAGCAGCAACTAA
AA sequence Show only first row Show all	>Lus10012881 pacid=23163062 polypeptide=Lus10012881 locus=Lus10012881.g ID=Lus10012881.BGIv1.0 annot-version=v1.0 MQDDTNPNPNTTASPNANGGDSQTPRGSFHRRAFSEFEFRIPDDLDLDPLDAPSVTSFDELGSEDDLFYTYMDMEGGSLGSKPDDIDQKIAGKVGIDDAA ANPSLSGGVGGNTGAKGKHRHSNSVDGSSFVQSVEAKKAMGPDKLAELWNMDPKRAKRIIANRQSAARSKERKARYILELERKVQNLQAEAATLGAQLTL FQRDTLGLTNENANLKLRVQAMEQQAQLREAVNDALKKEVEMLKIAMGERTAQQQLEYPYNMGMHHQHHHLSYNHPPFFPLHQQQPGNIMYNPHSIQVPQ FHPFQPNNNLPNSCHLPTVAAALPNHHGRGFPEMLPHERLQGLDISGGGGRSYVVVKSEGPSISASESSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10012881 [exp]	0	1
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10021823 [exp]	4.8	0.8874
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10027304 [exp]	5.3	0.8745
AT1G78560			Sodium Bile acid symporter fam...		Lus10013700 [exp]	11.9	0.8686
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10037029 [exp]	14.9	0.8365
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10038004 [exp]	15.2	0.8659
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10009595 [exp]	18.7	0.8433
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10005430 [exp]	23.8	0.8335
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	24.0	0.8387
AT3G60900		FLA10	FASCICLIN-like arabinogalactan...		Lus10038005 [exp]	26.8	0.8350
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10004353 [exp]	28.1	0.7959

Compare expression of checked genes

Lus10012881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.