Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10920 355 / 2e-123 MSD1, MEE33, ATMSD1 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) AT3G56350 316 / 8e-108 Iron/manganese superoxide dismutase family protein (.1) AT3G56340 136 / 4e-39 Ribosomal protein S26e family protein (.1) AT2G40590 134 / 2e-38 Ribosomal protein S26e family protein (.1) AT2G40510 134 / 2e-38 Ribosomal protein S26e family protein (.1) AT5G23310 119 / 4e-31 FSD3 Fe superoxide dismutase 3 (.1) AT5G51100 103 / 7e-25 FSD2 Fe superoxide dismutase 2 (.1) AT4G25100 95 / 2e-22 ATFSD1, FSD1 ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, Fe superoxide dismutase 1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034222 [exp] 420 / 2e-148 AT3G10920 370 / 2e-131 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Lus10030534 [exp] 348 / 1e-120 AT3G10920 241 / 8e-81 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Lus10030533 [exp] 162 / 3e-49 AT2G40510 185 / 1e-61 Ribosomal protein S26e family protein (.1) Lus10034223 [exp] 156 / 7e-47 AT2G40510 182 / 2e-60 Ribosomal protein S26e family protein (.1) Lus10029042 [exp] 156 / 7e-47 AT2G40510 182 / 2e-60 Ribosomal protein S26e family protein (.1) Lus10017378 [exp] 101 / 3e-24 AT5G23310 368 / 5e-129 Fe superoxide dismutase 3 (.1) Lus10026881 [exp] 99 / 4e-23 AT5G51100 373 / 3e-130 Fe superoxide dismutase 2 (.1) Lus10010174 [exp] 96 / 3e-22 AT5G23310 359 / 1e-125 Fe superoxide dismutase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G092600 [exp] 358 / 8e-125 AT3G10920 370 / 6e-132 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Potri.019G057300 [exp] 348 / 1e-120 AT3G10920 360 / 6e-128 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Potri.019G057000 [exp] 149 / 5e-44 AT3G56340 132 / 6e-41 Ribosomal protein S26e family protein (.1) Potri.013G093700 [exp] 147 / 3e-43 AT3G56340 130 / 3e-40 Ribosomal protein S26e family protein (.1) Potri.005G089600 [exp] 107 / 8e-27 AT5G23310 340 / 1e-118 Fe superoxide dismutase 3 (.1) Potri.015G110400 [exp] 101 / 2e-24 AT5G51100 335 / 3e-115 Fe superoxide dismutase 2 (.1) Potri.012G112301 [exp] 69 / 1e-13 AT5G51100 221 / 2e-72 Fe superoxide dismutase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01283 [flax] [poplar] Ribosomal_S26e Ribosomal protein S26e PF02777 [flax] [poplar] Sod_Fe_C Iron/manganese superoxide dismutases, C-terminal domain PF00081 [flax] [poplar] Sod_Fe_N Iron/manganese superoxide dismutases, alpha-hairpin domain
Representative CDS sequence Show only first row Show all	>Lus10012883 pacid=23163021 polypeptide=Lus10012883 locus=Lus10012883.g ID=Lus10012883.BGIv1.0 annot-version=v1.0 ATGGCGATCCGCTCTCTCTTCTCTCGTAAATCCCTCGCCAGATTATCGGCCGTATCAAAAACATCTCCCTCCGTCGTCCTAGGTCTGCGGCCGCTCTCCC AATCTAGAGACCTGACGACGGCTTCTCTTCCCGATCTCCCTTACGACTACGGCGCCCTGGAGCCGGCGATTTCCGGCGATATTATGAAGCTCCATCACCA GAAGCACCACCAGGCCTACGTCACCAACTACAACAAGGCTCTCGAGCAACTCCACGAAGCTACCCTCAAGGGCGATGCCGGGACCGTCGTTAAGCTCCAG AGCGCCATCAAGTTCAATGGCGGAGGTCATGTTAACCACTCAATCTTCTGGAAGAATCTTGCTCCTGTTCGTGAAGGAGGCGGTGAACCCCCACACAGTT CCCTGGGATGGGCTATTGACTCTCATTTCGGCTCCATTGAAGCACTGATACAAAAAATGAATGCTGAAGGTGCTGCTCTGCAAGGCTCTGGATGGGTGTG GCTAGGTCTTGACAAGGACACAAAGAAGCTTGTGGTTGAGACTACTGCTAACCAGGATCCGCTGGTCACTAAGGGAGCAACATTGATCCCCTTACTTGGT ATTGATGTCTGGGAGCATGCATACTACTTACAATACAAGAACGTGAGACCAGACTACCTAAAGAACATATGGAAGGTGATGAACTGGAACTCCACACTAC CACCTCTCTCTCGCGCCGGAAGGAAATCATCAGCTGCTGCAACCATGACGTTCAAGCGAAGGAATGGAGGTCGCAACAAGCACGGACGTGGCCACACCAA GTTCATCCGCTGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAAGCTATCAAGAGGTTTCTGGTGAGGAACATCGTTGAGCAAGCTGCTGTCCGTGAT GTTCAGGAGGCTTGCGTCTATGACGGATATGTTCTTCCGAAGCTGTACGTGAAGATGCAATACTGTGTCTCCTGTGCTATCCACTCTCGTGTTGTGAGGG TGCGATCCACTGTTGATCGTAGGAAGCGTGACCCACCACAGCGTTTCCAGAGGCGCAAGGAGGACAACAAGCCTGGCCAAGGTGCTGCAGGTGGTCCTGG AGCTCGCCCTGCTGGTGCTCCAGCTCCGGTCCGTACTTAA
AA sequence Show only first row Show all	>Lus10012883 pacid=23163021 polypeptide=Lus10012883 locus=Lus10012883.g ID=Lus10012883.BGIv1.0 annot-version=v1.0 MAIRSLFSRKSLARLSAVSKTSPSVVLGLRPLSQSRDLTTASLPDLPYDYGALEPAISGDIMKLHHQKHHQAYVTNYNKALEQLHEATLKGDAGTVVKLQ SAIKFNGGGHVNHSIFWKNLAPVREGGGEPPHSSLGWAIDSHFGSIEALIQKMNAEGAALQGSGWVWLGLDKDTKKLVVETTANQDPLVTKGATLIPLLG IDVWEHAYYLQYKNVRPDYLKNIWKVMNWNSTLPPLSRAGRKSSAAATMTFKRRNGGRNKHGRGHTKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRD VQEACVYDGYVLPKLYVKMQYCVSCAIHSRVVRVRSTVDRRKRDPPQRFQRRKEDNKPGQGAAGGPGARPAGAPAPVRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012883 [exp]	0	1
AT1G48830			Ribosomal protein S7e family p...		Lus10017497 [exp]	2.2	0.9019
AT1G09690			Translation protein SH3-like f...		Lus10030882 [exp]	4.7	0.8769
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10003290 [exp]	6.7	0.8737
AT3G02080			Ribosomal protein S19e family ...		Lus10013188 [exp]	11.3	0.8704
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10040316 [exp]	11.7	0.8652
AT2G40510			Ribosomal protein S26e family ...		Lus10030533 [exp]	12.4	0.8668
AT3G49470		NACA2	nascent polypeptide-associated...		Lus10032927 [exp]	12.5	0.8271
AT1G80560		ATIMD2	ARABIDOPSIS ISOPROPYLMALATE DE...		Lus10030344 [exp]	13.7	0.8379
AT1G02870			unknown protein		Lus10001459 [exp]	14.3	0.8287
AT5G03740	C2H2ZnF	HD2C, HDT3	HISTONE DEACETYLASE 3, histone...		Lus10020541 [exp]	16.5	0.8509

Compare expression of checked genes

Lus10012883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.