Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56330 389 / 7e-134 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030535 [exp] 634 / 0 AT3G56330 548 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10029044 [exp] 459 / 1e-160 AT3G56330 508 / 5e-179 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10034220 [exp] 107 / 2e-27 AT3G56330 94 / 1e-22 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G093500 [exp] 396 / 2e-136 AT3G56330 533 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02005 [flax] [poplar] TRM N2,N2-dimethylguanosine tRNA methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10012884 pacid=23163028 polypeptide=Lus10012884 locus=Lus10012884.g ID=Lus10012884.BGIv1.0 annot-version=v1.0 ATGTTAAGCCTCGACTTCGTCCCCAAAACCCTATCCCTTCATTTCTCTACCGGAGCTCCGAAATGGGGAACTTCATCGTCATCGCCGTCTAGGTTTAAGG TGAACTGCTGCAGTCCAGAGCGGCAAACGGAGAGAGGAGTCGAGTTCGAAACTGGAGGGGCATTCTACCGCCATGAGAGCTCGACGGGGCGAGATTTGGG AGTGCTGACCGCTTCGATTTACAGGCGATCCAATGGGAGCCTGCGAGTGCTGGACCCGATGTTCGGGTGCGGGATTCAGTCGTGCCGGTACTTGATGGAA TCGGAAGCGGATTTTGTGATGGCGAACGATGCGAATGATGAGTACAGGGTGGTTTGTCATTCTGAAGCGAATAGGTCTGCGATGCTAACTTTGAGATTGG GTGGGTTGCTTTACCTCACTGGCACCGATGGCTATACCTCCGGCGGCCACCGACCTCGTCATTCATTGGATGCATATGGAGCATTTGTTCGTCCGTTGCC ATTTTCGAACGAAATTGGCTTAAGAATGCTTATAGGTGGAGGTGTTCGTGAAGCAGCGGTGTTAGGCTATCATGTCACGCTATTGTTCTCGTACTATGCG TACCATGGACCGGTTTTCGAGAAGCTTCACCAGAACAGGGGCTATGGCTTCATTGGTTACTGCAACCGTTGCGGGCATTCTCAACCGTTTTCATGGGAGG AGCTCGGGGAGATTGGTTGCTCTTGTCGCAACTCAGAGGTATCTCATCAGCCATTCGTAGTGTCGGGACCAATGTGGATAGGACCTCTTCATAGCAGCGA TTACATCACACAGATGTCAAATTTGGCAGGAGAATGGCGATGGATTGGAAATGGTAGTATAGTTTCTCACCTGGAAAAGCTTCTGAACCAGATGTTGGAT GAAAGTGACCCGAGATTACCGCCAGGATACATCAAACTGGATGAGATTACGAAACGAGTGAAGATCACTGGCCCTCCATTAAAGACAATGATGAGCTCCT TGCATAAGATGGGATATGCTGCTAGCCGGTCACACATCGCGTCGAATGTCATCAAAACAGACTGTCCAATGGCAGGTTTGGTCAAGCTTGCCAAGGAACT CGTGAGCGTCATCCCCCAGTGTTAA
AA sequence Show only first row Show all	>Lus10012884 pacid=23163028 polypeptide=Lus10012884 locus=Lus10012884.g ID=Lus10012884.BGIv1.0 annot-version=v1.0 MLSLDFVPKTLSLHFSTGAPKWGTSSSSPSRFKVNCCSPERQTERGVEFETGGAFYRHESSTGRDLGVLTASIYRRSNGSLRVLDPMFGCGIQSCRYLME SEADFVMANDANDEYRVVCHSEANRSAMLTLRLGGLLYLTGTDGYTSGGHRPRHSLDAYGAFVRPLPFSNEIGLRMLIGGGVREAAVLGYHVTLLFSYYA YHGPVFEKLHQNRGYGFIGYCNRCGHSQPFSWEELGEIGCSCRNSEVSHQPFVVSGPMWIGPLHSSDYITQMSNLAGEWRWIGNGSIVSHLEKLLNQMLD ESDPRLPPGYIKLDEITKRVKITGPPLKTMMSSLHKMGYAASRSHIASNVIKTDCPMAGLVKLAKELVSVIPQC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10012884 [exp]	0	1
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10009562 [exp]	5.1	0.8721
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039148 [exp]	8.9	0.8616
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10017229 [exp]	9.8	0.8513
AT2G03880		REME1	required for efficiency of mit...		Lus10005642 [exp]	14.4	0.7805
AT4G19420			Pectinacetylesterase family pr...		Lus10034766 [exp]	15.3	0.8469
					Lus10011890 [exp]	16.6	0.8502
AT5G16030			unknown protein		Lus10033537 [exp]	18.2	0.8477
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	19.1	0.8510
AT1G73020			unknown protein		Lus10000526 [exp]	22.2	0.8335
AT1G12244			Polynucleotidyl transferase, r...		Lus10035777 [exp]	22.6	0.8325

Compare expression of checked genes

Lus10012884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.