Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56320 295 / 2e-92 PAP/OAS1 substrate-binding domain superfamily (.1) AT3G51620 271 / 1e-81 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT2G40520 223 / 3e-66 Nucleotidyltransferase family protein (.1.2.3.4) AT3G61690 212 / 1e-58 nucleotidyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030537 [exp] 1005 / 0 AT3G56320 445 / 3e-149 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10034219 [exp] 469 / 2e-159 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10029045 [exp] 467 / 4e-158 AT3G56320 456 / 1e-153 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10014166 [exp] 264 / 5e-80 AT3G51620 539 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 227 / 5e-65 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 226 / 1e-64 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10022746 [exp] 224 / 1e-64 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 213 / 7e-62 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10030265 [exp] 214 / 2e-59 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056800 [exp] 367 / 5e-119 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.015G020400 [exp] 226 / 1e-63 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.013G154900 [exp] 223 / 2e-63 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.012G000900 [exp] 224 / 9e-63 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.019G128800 [exp] 218 / 1e-61 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.002G169732 [exp] 219 / 3e-61 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 217 / 1e-60 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.011G116501 [exp] 51 / 2e-07 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03828 [flax] [poplar] PAP_assoc Cid1 family poly A polymerase CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10012885 pacid=23162994 polypeptide=Lus10012885 locus=Lus10012885.g ID=Lus10012885.BGIv1.0 annot-version=v1.0 ATGGGGGATCCTAAGAGGATTTCATCACCTGTATCCTCATCATCCTTTTCCTGCCCCAGACCTGAACAGAACCCTTTGGTTATGGACCCAGAACTCTGGT TGATGGCGGAACATAGAATCCATGAGATTTTGTGTTCTATTCAACCTGCTTTCGCATCTGAGAGGAAGAGACATGATGTTATATCATATGTAACGAGGTT GATTAAAGCACATTACCCAACTGAGGTTTTTGCCTTTGGATCAGTGCCCTTCAAAACCTATCTTCCGGATGGAGATATTGATCTGACAATCCTCAGCCAC CAGCCTATGGAAAAAGAACTGGCTGAGGGTGTGCTTAATCATCTCGAAAAGCATGTGCACGACCCCAGATTCAAAGTTAAAGTTATAAAGTGTTTGGTGA ATGAGATGTCTGTGGATATATCTTTCAATCAACTGGCGGGGCTTTCTGCTCTCTGCTTTCTGGAGCAGGTCCTCTATAAATTTCTGGACTACTATAGTTC TTTTGACTGGGAGAATTATGGTGTCAGCGTAAATGGTGTAATTGTGACATCTTATCTTCCCAATATTGTGGTCAAGCCACCAGCACAGGTTGAAGATCCA TCGCTGTTTGGGCCTAGCTTTCTTGGCTATTGCAATGAGACGTATGCAGTGCCAGTTAAGGCACTCGACCGTGGGAATCAAGAATTCATCGTTAAGCCCA TGAACATTGTGGATCCTTTAAAGGAAAACAACAACTTAGGCCGGAGTGTCAGTCAAGGAAATTTCCACCGCATCAAATCCGCCCTTTCCTATGGGGCACG GAGGCTTCGACAAATTCTTAGAGGGCCTGGAGGAAATCTTGGTAAAGGATTGGAGACATTTTTTGTCAACACTTTGGGCAGGAACGGTAGGGGAATGCGA CCTGATGCAAATGTTCCTGTTCCACCTTTTGGCACTGGAAGATCCGAGGTCAGTGATCTCTTTGCTGACCATGTAACTTGGTGCCATAGTGGTCTGCTAC AAGGCCAGTGGTATCACCATTATACCCTTCCTGATCATTTCCATCAGCTTCTTTCATTACGTCCTCAAACCTTGTCAAGGGGTTCTGGAAATGTCGTCCT TCCTGGGTCTCTGCAACACAGGCAGACTGTTCTTCATCACCCAGGAACCAATGCGTTTCTGCAACGAGGGCTGCCAAAGCTTTGCCCTTGTCCTGCAATA AAGTGTAGAAAGGACGCCCCGGAAAACCCAAGAGTTACAGTTACAAGCATAGGCACAGGCACATTCATCCCAAATACGGTCTTTTATGGACCAATATTCA AGGGGAAGAGCCCGGATCTGGGACAAGAGAACCGGCCAGCTAGTATGAATTTTAACGCGATAGATCTCGGACTGAAGAATTTCCCGTCACTTCTCTCTAC TGGAAATCCTGCTGGTGTCGTGCTGCATTTCAACAACTGGTCTACGTTCTCCATTGGCGAATCTTCCAAGACCTCGAGTGATTCATTGTCACCAAAATCA GAGCCAACTTCATTGGTCGGTGGTAGCCAAGATGATTCTCTCATCCCATCCAGTGTGGAATCTTCCGTCACTCCGACAGATGAGGAAACTGCTGAGCTTG AGATAGTTGACGTCCCTGGAGAAAGGGTTGCAAAAGAAAATGACAAAGGAAAGGGTCTATTGAAGAGCGAGGATTTCCCTGCTTTAACAAAGCTGGGCTA G
AA sequence Show only first row Show all	>Lus10012885 pacid=23162994 polypeptide=Lus10012885 locus=Lus10012885.g ID=Lus10012885.BGIv1.0 annot-version=v1.0 MGDPKRISSPVSSSSFSCPRPEQNPLVMDPELWLMAEHRIHEILCSIQPAFASERKRHDVISYVTRLIKAHYPTEVFAFGSVPFKTYLPDGDIDLTILSH QPMEKELAEGVLNHLEKHVHDPRFKVKVIKCLVNEMSVDISFNQLAGLSALCFLEQVLYKFLDYYSSFDWENYGVSVNGVIVTSYLPNIVVKPPAQVEDP SLFGPSFLGYCNETYAVPVKALDRGNQEFIVKPMNIVDPLKENNNLGRSVSQGNFHRIKSALSYGARRLRQILRGPGGNLGKGLETFFVNTLGRNGRGMR PDANVPVPPFGTGRSEVSDLFADHVTWCHSGLLQGQWYHHYTLPDHFHQLLSLRPQTLSRGSGNVVLPGSLQHRQTVLHHPGTNAFLQRGLPKLCPCPAI KCRKDAPENPRVTVTSIGTGTFIPNTVFYGPIFKGKSPDLGQENRPASMNFNAIDLGLKNFPSLLSTGNPAGVVLHFNNWSTFSIGESSKTSSDSLSPKS EPTSLVGGSQDDSLIPSSVESSVTPTDEETAELEIVDVPGERVAKENDKGKGLLKSEDFPALTKLG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10012885 [exp]	0	1
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10011320 [exp]	4.0	0.8092
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10017070 [exp]	5.1	0.8205
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006029 [exp]	5.3	0.8522
AT1G78910			Pseudouridine synthase family ...		Lus10033350 [exp]	5.7	0.8155
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10030537 [exp]	5.9	0.8141
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10032761 [exp]	6.7	0.7962
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10021766 [exp]	10.2	0.8000
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10030467 [exp]	13.2	0.7660
AT5G21080			Uncharacterized protein (.1)		Lus10016400 [exp]	15.0	0.7709
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005142 [exp]	15.3	0.7928

Compare expression of checked genes

Lus10012885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.