Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70760 183 / 5e-59 NdhL, CRR23 NADH dehydrogenase-like complex L, CHLORORESPIRATORY REDUCTION 23, inorganic carbon transport protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012886 [exp] 372 / 1e-133 AT1G70760 189 / 4e-61 NADH dehydrogenase-like complex L, CHLORORESPIRATORY REDUCTION 23, inorganic carbon transport protein-related (.1) Lus10030538 [exp] 328 / 7e-116 AT1G70760 191 / 6e-62 NADH dehydrogenase-like complex L, CHLORORESPIRATORY REDUCTION 23, inorganic carbon transport protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110400 [exp] 210 / 8e-70 AT1G70760 187 / 9e-61 NADH dehydrogenase-like complex L, CHLORORESPIRATORY REDUCTION 23, inorganic carbon transport protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10716 [flax] [poplar] NdhL NADH dehydrogenase transmembrane subunit
Representative CDS sequence Show only first row Show all	>Lus10012887 pacid=23162967 polypeptide=Lus10012887 locus=Lus10012887.g ID=Lus10012887.BGIv1.0 annot-version=v1.0 ATGAGCCATTCTTTGAGTCTCATCCCCAAAGCCTCTTCTTCTTCTTCTTGCTTTACTTCACCAAGATTGCTTTGGAATTCACCGGTTTCATCAGCAAATC GTCTTGTCAGTCAACAAAAGGACAAGACCAAGCAAGTAACAAGTAGAGTTCTCTGCATCTCCAGACCTGATAATGACTTCTTCAAGACCAGCAGCAGCTT ATCCATTCAATTCGGAGCAGCTCTTGCCATGCTTGAGCAGCCAGCATATGCAGTTACGGGAATGAACGACACCGAAGATCTGACATGGACTTTGATCCAA GCAGCCATTGTTGCCTTCGTTTACTTCATTCTTATGCCTCCCATCATAATGAACTGGCTGAGGATAAGGTGGTACAGAAGGAAACTGCTGGAGATGTATT TGCAGTTCATGTGTGTATTCCTCTTCTTCCCAGGGGTACTGTTGTGGGCGCCATTTCTCAACTTCAGGAAGTTCCCAAGAGATCCAAACATGAAGTACCC ATGGTCTGTGCCTGAGAATCCTTCTCTGATCAAGAACGATTACCGGAAATACCCTTTCGCCGCTCCTGAAGATTATGATGTGTTTGAGTAA
AA sequence Show only first row Show all	>Lus10012887 pacid=23162967 polypeptide=Lus10012887 locus=Lus10012887.g ID=Lus10012887.BGIv1.0 annot-version=v1.0 MSHSLSLIPKASSSSSCFTSPRLLWNSPVSSANRLVSQQKDKTKQVTSRVLCISRPDNDFFKTSSSLSIQFGAALAMLEQPAYAVTGMNDTEDLTWTLIQ AAIVAFVYFILMPPIIMNWLRIRWYRRKLLEMYLQFMCVFLFFPGVLLWAPFLNFRKFPRDPNMKYPWSVPENPSLIKNDYRKYPFAAPEDYDVFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012887 [exp]	0	1
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	1.0	0.9855
AT3G17930			unknown protein		Lus10026379 [exp]	3.9	0.9479
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10023436 [exp]	4.0	0.9586
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	5.2	0.9495
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10038292 [exp]	7.2	0.9488
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10038253 [exp]	8.0	0.9421
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10022507 [exp]	8.5	0.9462
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	8.8	0.9461
AT3G44800			Meprin and TRAF (MATH) homolog...		Lus10013547 [exp]	10.2	0.8797
AT1G69550			disease resistance protein (TI...		Lus10001788 [exp]	11.3	0.9130

Compare expression of checked genes

Lus10012887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.