Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40550 619 / 0 ETG1 E2F target gene 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030540 [exp] 1122 / 0 AT2G40550 645 / 0.0 E2F target gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056200 [exp] 737 / 0 AT2G40550 714 / 0.0 E2F target gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09739 [flax] [poplar] MCM_bind Mini-chromosome maintenance replisome factor
Representative CDS sequence Show only first row Show all	>Lus10012889 pacid=23163024 polypeptide=Lus10012889 locus=Lus10012889.g ID=Lus10012889.BGIv1.0 annot-version=v1.0 ATGGTCGGACCGATGTACGACTGCCTAGCAAACCCTCTCGGAGCAGTCCGACTCACATTCGAAAAGGCGGTAGGTTCCGCCGGCGGCGATCCATCCGCCT TCATCGGGAAAGACTGGGGAGCTCTCGACGTCTTCCACGAGTTTCTCTTCGACCAAGGAAACCTCTGTCAGGTTCCGGTTCTTAATCAAGAAACTCTGAG GTGGGTTCAGCCTAATACTCTGGTTCGGTTTAGGGGAATGGTACAGGACATGCTGGGAAATGAGTTCTACGTTGGTGCTCACAAGGATGGTGCGGTGTGG AGAACCAACAAATTTGCAGATGTGTCGCCATATCCCATTTCTACAACTGATGTAAAGATTTGGGAACGGAAATTGGTGTCCTGTGTTCCTGTGAGTTTGG CTTTCTGCATTGATGGTCCAAAAGTCCCTGGACTAAGTTCATGGGCGGAGTGTGAGACTCCTGCAGCCACTTGCATGGATTTGACATCACAGCAAAGAGA TAAACGTCCGAGAAGTGATGCTGAACCTATGGATTGCGAGGCATCAGTTACTGTGCTTGAAGATTCTCCTAGTGCAAAGAGGATGGCCAATACGGGAGGT TCTGATGTCGTGTTCTTTTTCCAGAGAGAGGATGGACATACTTCTCCATCTGTGCTTTCCAACCTTGACAGCGAAGGGCCATGTTCTAGCGCAATGTTCA GGCTAGAATTTGGTGGAGATTCTTTTGCTCGTCTTGTGAAGGTGTACGATTGCCCGGAGTCTGAAATGAAGCTGAATGATGTTTTTGAGTTTGTTGGTGT CTTCACTGTTGACTCGGATCCTATACCACTGAACGATGATGGTGATGATGTAGACTTAACCACTAGCTTAGGCAATGATATGATCCGCAAGGTCCCATGT CTTCACTGTATCATCCACAGGAAGCTTGCAGTTTCTGACTATATGAAGTCTTCCTCCAAGATAGAGCAAAGAATGCATCTAGTCAAAGATACAAGGGAAG CTCTGTTAAGGCATCTTACTATGCTTTTAGGCAATGATGGCCTCGCAGCTCACTACATGTTGCTGCATCTTTTGTCCAGGGTACACGCCCGGGTTGAGAA TGCTGCGATTGGGAAGCTTTCCTTGAACCTAACATGTTTCAACAAAGAGACTATGTCTGTATTCGGTGCTCAGCTCACTAATGCTCTGAAGAACCTGCTA CCATTCACAAATTCCATACTCTTAACAGTCGATTATCTTAACAAGGCTTGCCTTGCCCCAAAAAAAGATTATCAGAAAAATCGATTGATTCAAGGAGCAC TGCAGCTCGCTGAGGGCTCCCACTTGACAATCGACGAGACTCGATTAGAAGCTGGAACGCTCAACTCTGTCGGAATTGAGAATGCAAGGTTGCTTAAGAA TCTTACAGAGTTGCAGAAGGTGGAGTATGATTTCACATACTACAGGATGGAGATGTCAGCAGATGTTCAGCTACTGATATTGTCAGAGGGGAAGTCGAAC ATATTACCAGCCGATATAGTTTTGCCAGTGAGGCCTACCGATGTATGTTCCCCGGAAGCTGTGAACACTGATACCATGGAAGCTTGGAGATGGTACTTGG TTACCATGAGAACAATGTCCCATATTATGGAGCCCGAGATGCAAGAGGTGGTGGAAAAGGATCTAGTGGCTGCAAGGCAAGCCGATCGAAGCATTGGTAG TGAGGAGTTTAGCAGAATGCTGACTATGGGGAGGCTGTTGTCTTTGAGCTTTGGGGATAAGGTGCTGACTTTGGAGCACTGGGAAATGGTGAAGGAGCTT GAGAGGTTGAGGAAGGGGAGACTTATTGATTGA
AA sequence Show only first row Show all	>Lus10012889 pacid=23163024 polypeptide=Lus10012889 locus=Lus10012889.g ID=Lus10012889.BGIv1.0 annot-version=v1.0 MVGPMYDCLANPLGAVRLTFEKAVGSAGGDPSAFIGKDWGALDVFHEFLFDQGNLCQVPVLNQETLRWVQPNTLVRFRGMVQDMLGNEFYVGAHKDGAVW RTNKFADVSPYPISTTDVKIWERKLVSCVPVSLAFCIDGPKVPGLSSWAECETPAATCMDLTSQQRDKRPRSDAEPMDCEASVTVLEDSPSAKRMANTGG SDVVFFFQREDGHTSPSVLSNLDSEGPCSSAMFRLEFGGDSFARLVKVYDCPESEMKLNDVFEFVGVFTVDSDPIPLNDDGDDVDLTTSLGNDMIRKVPC LHCIIHRKLAVSDYMKSSSKIEQRMHLVKDTREALLRHLTMLLGNDGLAAHYMLLHLLSRVHARVENAAIGKLSLNLTCFNKETMSVFGAQLTNALKNLL PFTNSILLTVDYLNKACLAPKKDYQKNRLIQGALQLAEGSHLTIDETRLEAGTLNSVGIENARLLKNLTELQKVEYDFTYYRMEMSADVQLLILSEGKSN ILPADIVLPVRPTDVCSPEAVNTDTMEAWRWYLVTMRTMSHIMEPEMQEVVEKDLVAARQADRSIGSEEFSRMLTMGRLLSLSFGDKVLTLEHWEMVKEL ERLRKGRLID

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10012889 [exp]	0	1
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	1.4	0.9804
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	1.4	0.9819
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027848 [exp]	2.6	0.9578
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	3.0	0.9734
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	4.0	0.9543
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10020154 [exp]	4.2	0.9530
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10004012 [exp]	4.2	0.9592
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	5.0	0.9682
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	5.7	0.9701
AT4G31400		CTF7	damaged DNA binding;DNA-direct...		Lus10021277 [exp]	6.0	0.9335

Compare expression of checked genes

Lus10012889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.