Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74260 2269 / 0 PUR4 purine biosynthesis 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030542 [exp] 2731 / 0 AT1G74260 2303 / 0.0 purine biosynthesis 4 (.1) Lus10004706 [exp] 2474 / 0 AT1G74260 2253 / 0.0 purine biosynthesis 4 (.1) Lus10040273 [exp] 1027 / 0 AT1G74260 921 / 0.0 purine biosynthesis 4 (.1) Lus10040272 [exp] 439 / 4e-143 AT1G74260 366 / 1e-116 purine biosynthesis 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200200 [exp] 2391 / 0 AT1G74260 2285 / 0.0 purine biosynthesis 4 (.1) Potri.008G058600 [exp] 1714 / 0 AT1G74260 1642 / 0.0 purine biosynthesis 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02769 [flax] [poplar] AIRS_C AIR synthase related protein, C-terminal domain PF00586 [flax] [poplar] AIRS AIR synthase related protein, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012890 pacid=23162970 polypeptide=Lus10012890 locus=Lus10012890.g ID=Lus10012890.BGIv1.0 annot-version=v1.0 ATGGCGGGCACTACAGGGTTAGCTGCAACAGCTACTGAGTTCCTGAGAGGCACTTCAGGGCAGGCCCTGTTTTTAAGAAGGGATTTGCCTCTTAACAGGC GAAACCAACTGATATTGGGAACACTCCGTGCTGGGAACAATCCCAATCTAGGAAGACGAGCTGTTTCACTGAGGTGTTCTTCTAATTCGAAGAAAGCAAG AGCAGTGGTTGAACAGGAACATGCCAGGTTGGTTGACAAGCCTACTGAAGAAGAAGTCATCCATTTTTACCGTGTACCAATGATTCAAGAGAGTGCAACT CTCGAACTTCTCAAGGCTGTTCAAACTAAAGTTTCGAAAGAGATTGTTGGGTTACAGACTGAACAGTGTTTCAACGTTGGGCTCACTTCCCAGCTTTCGA AGGACAAGCTTGCAGTACTTAGATGGCTTCTTCAGGAAACGTACGAGCCTGAGAATTTGGGCACGGAAAGCTTCCTCGAAAAGAAGAAGAGAGAAGGGCT GTGTAAGGTTATAGTTGAGGTTGGTCCGAGGTTATCTTTCACCACTGCTTGGTCAGCAAATGCTGTTTCGATATGCGGTGCTTGTGGCCTAACTGAGGTG AGTAGAATGGAAAGGTCCAGGAGGTATTTGCTATACAGTAAGGGTCCTTTATCGGATTCACAAATTAATGATTTAGCGTCCATGGTTCATGATCGGATGA CTGAGTGTGTCTACATTGAAAAGTTGACTTCTTTTGCGACCAGTGTGGCTCCCGAGGAGGTTATGTTTGTGCCTGTTATGGAGAGGGGAAGGAAGGCCTT GGAGGAGATTAATCAGGAGATGGGTTTAGCCTTTGATGAGCAGGATTTGGAGTACTACACCAGGCTGTTTAGGGAGGATATCAAAAGGAATCCTTCTACT GTGGAGTTATTCGACATTGCCCAATCTAATAGCGAGCATAGTAGGCATTGGTTCTTCACCGGGAAGATTGTTGTTGATGGGGAACCCATGAACAGAACAC TTATGCAGATTGTGAAGAGCACATTACAGTCGAATCCAAATAATTCAGTAATTGGCTTCAAGGATAACTCTAGTGCAATCAAGGGTTTCCCTGTGGAACA TTTACGGCCAGTTAAGCCTGGGTTACCTGGTCCGTTGGGTCCTGTTTCTCGGGACCTTGATGTTCTATTTACAGCTGAGACGCACAATTTTCCTTGTGCT GTGGCACCTTACCCTGGTGCTGAGACAGGTGCTGGAGGTCGAATCAGGGATACACATGCGACGGGTAGAGGGTCATTTGTTGTTGCATCCACAGCTGGCT ATTGTGTCGGTAATCTGAATATTGAGGGATCGTATGCTCCTTGGGAAGATCCTTCATTTGCATATCCATCAAATTTGGCATCACCTCTGCAGATTCTCAT TGATGCTAGCAATGGTGCATCAGACTATGGAAACAAATTTGGGGAACCTTTGATTCAAGGTTATACCAGAACATTTGGGATGAGACTTCCAAGCGGGGAG AGAAGAGAATGGTTGAAGCCAATTATGTTCAGTGCAGGCATTGGGCAAATTGACCATATTCATATAACCAAAGGGGAGCCTGATATCGGTATGTTGGTAG TCAAGATTGGAGGTCCTGCATACCGCATTGGAATGGGAGGTGGAGCAGCATCGAGCATGGTTAGTGGGACGAATGATGCGGAGCTTGATTTCAATGCTGT ACAGCGTGGAGATGCTGAGATGGCACAAAAATTGTATCGAGTTGTTCGTGCCTGCATTGAGATGGGGGAAAAAAACCCTATCATCAGCATCCATGATCAA GGAGCTGGTGGTAACTGCAATGTTGTCAAAGAAATTATTTACCCAAAGGGTGCTGAGATTGACATCCGAGCAATTGTAGTTGGTGATCATACCATGTCTG TCTTGGAGATATGGGGTGCGGAGTATCAGGAGCAAGATGCAATCTTGGTGAAACCTGAAAGCCGGAGTCTCTTGCAATCGGTATGTGAAAGGGAAAGGCT TTCAATGGCAGTTATAGGGACAATAAGTGGAGATGGACGTTGTGTTTTGGTTGACAAGTTAGCAGCTGAGAGATCTCGTTCGAGTGGACTTCCTACTCCT CCTCCTGCTGTAGATCTTGAGCTTAGTAAAGTACTTGGGGATATGCCTCAGAAGACTTTTGAATTCCAGCGGGTTGCTAAAGTTCAAGAGCCACTTAATA TTGCTCCTGGGCTTACGGTGCTGGATGCCTTAAAGAGGATATTGCGCCTTCCATCAGTATGCTCTAAGCGTTTCTTAACAACAAAAGTTGATAGATGCGT CACAGGGCTTGTAGCGCAGCAACAAACTGTGGGTCCTTTGCAGATTACACTTGCTGATGTGGCTGTCATTGCTCAAACTTATTCGGACTTGACTGGAGGG GCTTGTGCTATTGGGGAGCAACCAATTAAAGGGTTGCTGAATCCAAAAGCAATGGCTAGATTGGCAATGGGAGAATCACTCACAAATTTGGTCTGGGCAA AAGTTACATCTCTTTCTGATGTTAAGGCAAGTGGAAATTGGATGTATGCTGCCAAGGTTGACGGAGAAGGAGCTGATATGTATGATGCTGCAACAGCTCT TTCAGAAGCGATGATCGAACTTGGTATTGCAATTGATGGGGGAAAGGATAGTCTGTCAATGGCTGCTCATGCAGGTGATGAGGTCGTTAAGGCTCCTGGT AATCTGGTTATCAGTACTTACGTCACTTGTCCTGACATCACCAAAACTGTTACACCTGATCTAAAGTTGGGGAATGATGGTGTGTTGCTTCATATTGATT TGGGCAAGGGAAATCGACGATTAGGTGGTTCTGCACTTGCGCAAGCTTTTGATCAAGTTGGAAATGACTGTCCTGATCTTGACGATGTTCCTTATCTGAA GAAGGTATTCGAGGGTGTCCAGGAACTACTTACAGATGAGCTCATCTCATCAGGCCATGACATCAGTGATGGTGGCTTACTTGTCTGTGCATTAGAAATG GCATTTGCTGGGAATCGTGGTATCATTTTAGACTTGCAGTCACGGGGTAAGAATCTATTCCAAACCCTATTTGCGGAAGAGCTAGGCATGATTGTTGAGG TTAGCAGGAATAACTTGGATAAGGTGATGGGGAAACTTAATGGTCGAGAAGTTACTGCCGAAATTATCGGTCAAGTAACTACTTCTCCCTTGGTGGAACT TATTGTTGATGGACAAACTCAATTGAGAAAGGAAACTTCACTTCTCAGAGACATGTGGGAGGATACAAGCTTTCAGCTGGAAAAGCTTCAAAGATTGGCG TCTTGTGTGGAGTCAGAGAAAGAAGGTTTGAAATACCGACACGAGCCGATGTGGAAATTGTCGTTCTCCCCATCTTTTACAGATGACAGATATCTTACTG CGACTTCTAAACCAAAGGTCGCCATAATACGAGAGGAAGGAAGCAATGGAGACAGGGAAATGTCCGGTGCATTCTATGCTGCTGGGTTCGAACCATGGGA TATAGCAATGTCCGATCTTCTGAAAGGAGACGTATCCCTTGGTGAATTCCGGGGTATTGTGTTTGTGGGAGGTTTTAGTTATGCTGATGTGCTCGATTCC GCAAAAGGTTGGTCTGCTTCCATTCGATTCAATCAGCCTCTGTTAGCCCAATTTCAGGAATTCTACAAGCGGCAAGACACCTTCAGTCTTGGTATCTGTA ATGGTTGCCAGCTCATGGCTCTTCTCGGGTGGATTCCGGGTCCCCAGGTTGGTGGTGTTCATGGTGCTGGAGGGGACCCTTCGCAGCCAAGATTCGTTCA CAACGAGTCGGGTCGATTCGAGTGCCGTTTTACAAGTGTGACAATACAAGAGTCCCCTGCTGTAATGCTTAAAGGAATGGAAGGTAGTACAATAGGTGTG TGGGCAGCTCACGGTGAGGGAAGGGCGTACTTCCCGGATGATGGTGTTCTCGATCGTGTTATTCATTCGAACTTAGCGCCAGTGAGATACGCTGACGATG ATGGCAATCCGACAGAATCTTACCCATTTAATATGAATGGCTCTCCATTGGGAGTGGCTGCAATCTGCTCCCCTGATGGAAGGCATCTCGCTATGATGCC CCATCCGGAGCGTTGCTTCTTAATGTGGCAATTCCCATGGTACCCAACCCACTGGGATGTCGACAAGAAAGGCCCTAGCCCATGGTTAAAGATGTTTCAG AATGCCAGAGAATGGTGCTCTTAA
AA sequence Show only first row Show all	>Lus10012890 pacid=23162970 polypeptide=Lus10012890 locus=Lus10012890.g ID=Lus10012890.BGIv1.0 annot-version=v1.0 MAGTTGLAATATEFLRGTSGQALFLRRDLPLNRRNQLILGTLRAGNNPNLGRRAVSLRCSSNSKKARAVVEQEHARLVDKPTEEEVIHFYRVPMIQESAT LELLKAVQTKVSKEIVGLQTEQCFNVGLTSQLSKDKLAVLRWLLQETYEPENLGTESFLEKKKREGLCKVIVEVGPRLSFTTAWSANAVSICGACGLTEV SRMERSRRYLLYSKGPLSDSQINDLASMVHDRMTECVYIEKLTSFATSVAPEEVMFVPVMERGRKALEEINQEMGLAFDEQDLEYYTRLFREDIKRNPST VELFDIAQSNSEHSRHWFFTGKIVVDGEPMNRTLMQIVKSTLQSNPNNSVIGFKDNSSAIKGFPVEHLRPVKPGLPGPLGPVSRDLDVLFTAETHNFPCA VAPYPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNIEGSYAPWEDPSFAYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPSGE RREWLKPIMFSAGIGQIDHIHITKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGTNDAELDFNAVQRGDAEMAQKLYRVVRACIEMGEKNPIISIHDQ GAGGNCNVVKEIIYPKGAEIDIRAIVVGDHTMSVLEIWGAEYQEQDAILVKPESRSLLQSVCERERLSMAVIGTISGDGRCVLVDKLAAERSRSSGLPTP PPAVDLELSKVLGDMPQKTFEFQRVAKVQEPLNIAPGLTVLDALKRILRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQITLADVAVIAQTYSDLTGG ACAIGEQPIKGLLNPKAMARLAMGESLTNLVWAKVTSLSDVKASGNWMYAAKVDGEGADMYDAATALSEAMIELGIAIDGGKDSLSMAAHAGDEVVKAPG NLVISTYVTCPDITKTVTPDLKLGNDGVLLHIDLGKGNRRLGGSALAQAFDQVGNDCPDLDDVPYLKKVFEGVQELLTDELISSGHDISDGGLLVCALEM AFAGNRGIILDLQSRGKNLFQTLFAEELGMIVEVSRNNLDKVMGKLNGREVTAEIIGQVTTSPLVELIVDGQTQLRKETSLLRDMWEDTSFQLEKLQRLA SCVESEKEGLKYRHEPMWKLSFSPSFTDDRYLTATSKPKVAIIREEGSNGDREMSGAFYAAGFEPWDIAMSDLLKGDVSLGEFRGIVFVGGFSYADVLDS AKGWSASIRFNQPLLAQFQEFYKRQDTFSLGICNGCQLMALLGWIPGPQVGGVHGAGGDPSQPRFVHNESGRFECRFTSVTIQESPAVMLKGMEGSTIGV WAAHGEGRAYFPDDGVLDRVIHSNLAPVRYADDDGNPTESYPFNMNGSPLGVAAICSPDGRHLAMMPHPERCFLMWQFPWYPTHWDVDKKGPSPWLKMFQ NAREWCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10012890 [exp]	0	1
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10030542 [exp]	1.0	0.9685
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10029620 [exp]	1.4	0.9063
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	2.4	0.9061
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	5.5	0.8851
AT2G37310			Pentatricopeptide repeat (PPR)...		Lus10025273 [exp]	5.7	0.8976
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10033332 [exp]	6.3	0.8516
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10023710 [exp]	6.3	0.8779
AT4G14170			Pentatricopeptide repeat (PPR)...		Lus10036095 [exp]	6.6	0.8676
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	6.9	0.8676
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10029194 [exp]	7.1	0.8566

Compare expression of checked genes

Lus10012890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.