Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05310 549 / 0 TLC ATP/ADP transporter (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030543 [exp] 850 / 0 AT5G05310 597 / 0.0 TLC ATP/ADP transporter (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048700 [exp] 605 / 0 AT5G05310 559 / 0.0 TLC ATP/ADP transporter (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03219 [flax] [poplar] TLC TLC ATP/ADP transporter
Representative CDS sequence Show only first row Show all	>Lus10012891 pacid=23163045 polypeptide=Lus10012891 locus=Lus10012891.g ID=Lus10012891.BGIv1.0 annot-version=v1.0 ATGGGGAGACCTCGATTGGACGCCATTATCTCCGTCTTCGTCACCGTCCATCCTCACGAACTTCACGCCCTGATTCACTCAGCTTCCTCTTTCTTCTTCA TACTCAGCGCTTATTTCGTGGTGCTGCCATTGCGGGACGAAGGCGCCATTTCGCTTGGACTTTCCAACCTACCATCGTTGTTCATCGGATCGTTGGCCCT TACTTTGATTGCAGCTCCTTTGTCCACTCTCATATTCTCCTTTCCTAATTTATCCAAAACCAAGATGGATGCAGGTGATTTGAAGATGGATGAAAATGGA GATGGTAATGCACATCCTGTAGTCTGGACTAAGCATGGATGGTTTTATGTTTCTGTGAGGATTGGTTTATTTCTCTGGGTGGCATTGCTAAATCTTATTA CCATCTCTTCGACTTGGGCGAGGATAATTGATGTGATGGACAGCGAGTCAGGTTCGAGATTATTTGGGTTCATAGGTGCTGGTGCCACTCTGGGACAGCT TTTCGGATCACTATTTGCCTCTGGAATGGCTTGGTTAGGATCATACGTGAGCTGCTTCGCTGCAGTTTTACTTCTATTTGCTGCTTTCCTAATGGAACTT GCTGCACAATCATCGAAAGGGATTGACAAAGATTTCTCCCATCCGCCTGAAGAGTTATTTCCCTTGAGGACCTGTGATCCTAATCAACAAACTGACACTG ACAGACAGTCATCGCCAACTTCTAGAGTGGCTACTCCAAAGTCACCTCAACCTCAGATGAAGCCTCAAATATCTGCGATCTTAGATGGGTTGTGGCTTAT ATTATCATCAACTTATTTGCTATATGTGTCCCTCTTCCTATGGCTGAGTGCAGTCGTCTCGTCTTTCTTCTATTTTCAGAAAGTGACAGTTATTGCGTTG ACTATAACAACTTCTATTGGCAGAAGGAAAATGTTCGCCCAGATAAATAGTTTCATCGCCATCTTTATACTTGCTGGACAACTTACACTAACGGGTCCTA TCTTGACTGTGGCTGGGGTAACTATAGCTTTATGCGCTGCTCCTGCTGTCGCCTTCTCCAATTTAATCGCTGTTGCTGTTTGGCCAACTTGGATGGCTGT TGCCATTTGCGAGACCTTACGGAAGGTTGTTACATATGTAGTCACCAGGCCAGGAAGAGAACTCTTGTTCACTGTCGTCTCTCAGGACGAGAAGTACAAA GCTAAGGTCTGCATAGATGTAATAGTTCAGCGGCTTGGGGACGCCACAGCAGCAGGAATGTACCAATTGCTATTCACCTCCCTTCATGAAAAGCCATCAA CTGTTTCTCTCTATGCCCTACCTGTACGTATCACCGGCCATCTTATCTCGAAAATCATCTGTTTTCAAATAACGGTTTCGTTACCATGTTCCTTTACTGA ACAGAAGGTAATTGCCAATGTCTTCCCAGGTCTGTGTGTTGTGGATACTCACTGCATTCCATCTGGGAAGACGCCAAGTCCATCTAGCAAAGCTTCAAAC CGGTCAAACCAGCTGAAAACTTTTCGAAACACACGAATTACCCACTCCGGCCATCGGATATTTGACGTCTAA
AA sequence Show only first row Show all	>Lus10012891 pacid=23163045 polypeptide=Lus10012891 locus=Lus10012891.g ID=Lus10012891.BGIv1.0 annot-version=v1.0 MGRPRLDAIISVFVTVHPHELHALIHSASSFFFILSAYFVVLPLRDEGAISLGLSNLPSLFIGSLALTLIAAPLSTLIFSFPNLSKTKMDAGDLKMDENG DGNAHPVVWTKHGWFYVSVRIGLFLWVALLNLITISSTWARIIDVMDSESGSRLFGFIGAGATLGQLFGSLFASGMAWLGSYVSCFAAVLLLFAAFLMEL AAQSSKGIDKDFSHPPEELFPLRTCDPNQQTDTDRQSSPTSRVATPKSPQPQMKPQISAILDGLWLILSSTYLLYVSLFLWLSAVVSSFFYFQKVTVIAL TITTSIGRRKMFAQINSFIAIFILAGQLTLTGPILTVAGVTIALCAAPAVAFSNLIAVAVWPTWMAVAICETLRKVVTYVVTRPGRELLFTVVSQDEKYK AKVCIDVIVQRLGDATAAGMYQLLFTSLHEKPSTVSLYALPVRITGHLISKIICFQITVSLPCSFTEQKVIANVFPGLCVVDTHCIPSGKTPSPSSKASN RSNQLKTFRNTRITHSGHRIFDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10012891 [exp]	0	1
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Lus10020897 [exp]	3.2	0.9037
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	4.2	0.8931
AT1G31500			DNAse I-like superfamily prote...		Lus10042463 [exp]	6.6	0.8308
AT1G20670			DNA-binding bromodomain-contai...		Lus10001391 [exp]	6.7	0.8819
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	7.5	0.8418
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10031501 [exp]	13.7	0.8276
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	14.8	0.8637
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10013457 [exp]	17.1	0.8678
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	20.4	0.8338
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10003496 [exp]	23.9	0.8185

Compare expression of checked genes

Lus10012891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.