Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40490 617 / 0 HEME2 Uroporphyrinogen decarboxylase (.1) AT3G14930 410 / 9e-142 HEME1 Uroporphyrinogen decarboxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030544 [exp] 763 / 0 AT2G40490 619 / 0.0 Uroporphyrinogen decarboxylase (.1) Lus10011170 [exp] 393 / 5e-135 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3) Lus10043079 [exp] 395 / 8e-135 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048900 [exp] 680 / 0 AT2G40490 633 / 0.0 Uroporphyrinogen decarboxylase (.1) Potri.001G390800 [exp] 393 / 3e-135 AT3G14930 627 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3) Potri.013G083200 [exp] 371 / 1e-129 AT2G40490 319 / 3e-109 Uroporphyrinogen decarboxylase (.1) Potri.011G109800 [exp] 227 / 5e-72 AT3G14930 386 / 2e-134 Uroporphyrinogen decarboxylase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0160 [flax] [poplar] Methionine_synt PF01208 [flax] [poplar] URO-D Uroporphyrinogen decarboxylase (URO-D)
Representative CDS sequence Show only first row Show all	>Lus10012892 pacid=23163063 polypeptide=Lus10012892 locus=Lus10012892.g ID=Lus10012892.BGIv1.0 annot-version=v1.0 ATGTCTGCCATTGTCTCTGGAGGAGGAGTAGGAGGAGCAGTTAGCTCAATTAGCTCTTCGTTCTCCGCTCCGACGAGAATCTCCTCTCCTAAGCATCCCT CTGTCGTACGCTGTGGGCTTCAAGGAACGGTGGCTGAACCACAAGCTGCATCTCTTACTGAACCCCTTCTGCTTAATGCTGTTAAAGGACTTGATGTTGA GAGGCCCCCAGTTTGGCTTATGCGGCAGGCTGGGCGGTACATGAAGGCAGTTTTTCTGTCGTTCTTTGAGCAGAGTTACCAAACTCTATGCGAAAAGCAT CCTTCATTTCGTGAAAGATCGGAAAATGTTGATCTTGTAGTTGAAATCTCACTACAACCGTGGAAAGTTTTTCAACCTGATGGGGTTATCTTATTTTCTG ATATCTTGACCCCACTTTCCGGGATGAACATACCTTTCGACATTGTGAAAGGCAAGGGTCCCGTCATCTTCGATCCTTTGCGTACATTAGACGATGTTGA TCAAGTGAGAGAGTTTGTTCCGGAAGAGTTTGTTCCATATGTTGGGGAAGCATTGACAATCTTGCGAAAAGAGGTTGATAACAAAGCTGCAGTGCTGGGT TTTGTTGGAGCTCCTTTCACACTTGCATCGTACGTTGTTGAAGGCGGTTCATCAAAGCATTTCACCAAGATAAAAAGATTGGCTTTCTCACAGCCAAAGG TTCTACACGCGCTGCTTCAGAAGTTCGCAACATCCATGGCCAAGTACGTCCAATACCAAGCCGACCACGGAGCTCAAGCCGTCCAAATCTTCGACTCATG GGCCACAGAACTGAGTCCGGTCGATTTCGAGGAATTCAGCCTCCCTTACTTGAAGCAGATAGTCGACACAGTAAAGCAAACCCACCCGAACCTCCCACTA ATCCTCTACGCGAGCGGATCTGGCGGGTTGCTCGAGAGGCTGGCACTGACCGGTGTGGACGTAGTTAGCTTGGACTGGACGGTGGACATGGCGGAAGGCA GGAGGCGGCTGGGAGCGGACATAGCAGTCCAGGGGAATGTCGATCCGGGTGTACTTTTCGGGTCGAAACAGTTCATCACCGACCGGATCGACGATGTTGT AAAGAAGGCCGGTAAGGGGAAACATATACTGAACCTTGGACATGGGATTGTTGTTGGGACACCGGAGGAGAACGTTGCTCATTTTTTCGAGGTTGCTAAA GGGCTTAGATACTGA
AA sequence Show only first row Show all	>Lus10012892 pacid=23163063 polypeptide=Lus10012892 locus=Lus10012892.g ID=Lus10012892.BGIv1.0 annot-version=v1.0 MSAIVSGGGVGGAVSSISSSFSAPTRISSPKHPSVVRCGLQGTVAEPQAASLTEPLLLNAVKGLDVERPPVWLMRQAGRYMKAVFLSFFEQSYQTLCEKH PSFRERSENVDLVVEISLQPWKVFQPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPLRTLDDVDQVREFVPEEFVPYVGEALTILRKEVDNKAAVLG FVGAPFTLASYVVEGGSSKHFTKIKRLAFSQPKVLHALLQKFATSMAKYVQYQADHGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPNLPL ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGADIAVQGNVDPGVLFGSKQFITDRIDDVVKKAGKGKHILNLGHGIVVGTPEENVAHFFEVAK GLRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10012892 [exp]	0	1
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10030544 [exp]	2.4	0.9318
AT4G28660		PSB28	photosystem II reaction center...		Lus10024959 [exp]	2.4	0.9271
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10009181 [exp]	3.5	0.9151
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10015462 [exp]	6.0	0.9306
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10001369 [exp]	7.5	0.9212
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015831 [exp]	9.5	0.9166
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10027750 [exp]	9.9	0.9029
AT3G55040		GSTL2	glutathione transferase lambda...		Lus10040347 [exp]	11.7	0.8946
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10021295 [exp]	12.6	0.9124
AT5G66530			Galactose mutarotase-like supe...		Lus10028310 [exp]	18.5	0.8680

Compare expression of checked genes

Lus10012892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.