Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58380 446 / 3e-154 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G45820 432 / 5e-149 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G07070 424 / 6e-146 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G01810 417 / 9e-144 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT4G18700 401 / 3e-136 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 400 / 4e-136 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G30270 395 / 4e-134 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G25110 389 / 1e-131 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT1G29230 375 / 7e-126 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT1G01140 372 / 1e-125 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029054 [exp] 556 / 0 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10034212 [exp] 554 / 0 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10030546 [exp] 521 / 0 AT5G58380 254 / 8e-82 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 456 / 2e-158 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 449 / 1e-155 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 446 / 3e-154 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 415 / 4e-142 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10021852 [exp] 399 / 5e-136 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10042816 [exp] 392 / 4e-133 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048800 [exp] 500 / 5e-176 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.016G133500 [exp] 479 / 4e-167 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 446 / 2e-154 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 439 / 7e-152 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 434 / 1e-149 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G186200 [exp] 406 / 4e-139 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G062800 [exp] 395 / 1e-134 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G108500 [exp] 394 / 2e-134 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G263500 [exp] 387 / 2e-131 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.004G058300 [exp] 387 / 2e-130 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012893 pacid=23163052 polypeptide=Lus10012893 locus=Lus10012893.g ID=Lus10012893.BGIv1.0 annot-version=v1.0 ATGTATGGACGCCTGCCAATTCATGTAGAACCTATTCCGTGTGTTAAAAAGAATTCTTCACCGGAAATGGAAAACAATGGGACCAAAATTCTGATGGAGA GGTATGAAGTCGGCAGGCTGCTAGGCCAAGGCCAATTTGCCAAAGTCCACTATGCTCGAGACCTCCAAACCGGAAACAGCGTGGCAATCAAGGTAATCGA CAAGGAAAAGGCTCAGAAAGCAGGACTAACCACCACCAACATCAAGCAAGAGATCCACATCATGAGACTCGTGCACCAACACAAAAACGTGTTGAACCTC TACGAAGTCCTGGCCTCGAAAACAAAGATCTACTTCGTCCTCGAGTACGCTAAAGGCGGAGAGCTTTTCCAAAAGGTTGCCAAGGGCAGACTCAAGGAAG ACACAACTAGGAAGTACATCCACCAGCTGATCAACGCAGTTGACTTCTGTCACAAGAGAGGAGTTTACCATAGAGACCTCAAGCCCGAGAATTTACTCCT GGATGGGGACGGAATGCTCAAAGTTTCCGACTTTGGCCTCGCGAGGAATTCTCGAGATTCGATGATGTTGCGTACGATGTGTGGGACGCCTGCCTATGTG GCGCCAGAGGTTGTGAGCAGAAGAGGCTACGATGGCTCGAAGTCCGATGTGTGGTCGTGTGGGGTGATCTTGTATGTGATGCTTGCTGGCTATTTACCGT TCCACGACGAAAATATCATTGCCTTGTACAGGAAGGCTAGCAATGGTGACTACAAGTTCCCCACTTGGTTTTCGCCTGAAGTGTGTCGATTAGTGTTGAG AATGCTGGATCCGAATGCAGCTACTCGGATCAGCATTTCAGAGATAATCAACGATCCTTGGTTCAGAAAAGGGTTGGATGATCATGATCATGAAAATGAT ATAACCAACTCTGTTACTACTAGCACCGCTGAAGAACAAGAAGGGGACCGAATTCTTAAACCGACAAACTTGAATGCATTTGATATAATCTCGTTTTCGA CCGGACTTGACTTGTCTGGTATGTTTGCTCAAGATGATCTGAAGAGCATGAACGACAAACAAACGTTGAAGTTTGTGTCGATGAAGTCTGGATCGGAGAT TGTGTCCAAGCTGGAGGGGATTGCTGCGAGTCGAAGGTTACGAATTAAGAATAGGGACAGAGGGATGTTGGTGCTTGAGGAGGCAATGGATGTTGAAGGA GGTGTGATAAGGGGTTTATGTGTTGATGCTGAGGTGTTTGAGTTCACTCCTTTCTGTCATCTGGTTGAGCTGAGGATGTCTGGTGAAGGTGATTCGGTGG AACAATGGCGGATTGCAGAACGGAGCTGGTTAAGGGAAGATCTGAAGGACATTGTTTGGTCGTGGATGGATGGTTCGTGA
AA sequence Show only first row Show all	>Lus10012893 pacid=23163052 polypeptide=Lus10012893 locus=Lus10012893.g ID=Lus10012893.BGIv1.0 annot-version=v1.0 MYGRLPIHVEPIPCVKKNSSPEMENNGTKILMERYEVGRLLGQGQFAKVHYARDLQTGNSVAIKVIDKEKAQKAGLTTTNIKQEIHIMRLVHQHKNVLNL YEVLASKTKIYFVLEYAKGGELFQKVAKGRLKEDTTRKYIHQLINAVDFCHKRGVYHRDLKPENLLLDGDGMLKVSDFGLARNSRDSMMLRTMCGTPAYV APEVVSRRGYDGSKSDVWSCGVILYVMLAGYLPFHDENIIALYRKASNGDYKFPTWFSPEVCRLVLRMLDPNAATRISISEIINDPWFRKGLDDHDHEND ITNSVTTSTAEEQEGDRILKPTNLNAFDIISFSTGLDLSGMFAQDDLKSMNDKQTLKFVSMKSGSEIVSKLEGIAASRRLRIKNRDRGMLVLEEAMDVEG GVIRGLCVDAEVFEFTPFCHLVELRMSGEGDSVEQWRIAERSWLREDLKDIVWSWMDGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10012893 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10012759 [exp]	5.7	0.8807
AT5G08391			Protein of unknown function (D...		Lus10015770 [exp]	10.9	0.8000
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	11.1	0.8906
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Lus10038674 [exp]	14.1	0.8593
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10025962 [exp]	15.1	0.8849
AT2G22590			UDP-Glycosyltransferase superf...		Lus10025711 [exp]	15.1	0.8306
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10039551 [exp]	15.8	0.8958
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032218 [exp]	16.2	0.8541
AT5G01740			Nuclear transport factor 2 (NT...		Lus10029439 [exp]	16.4	0.8234
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Lus10036524 [exp]	18.1	0.8905

Compare expression of checked genes

Lus10012893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.