Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06470 258 / 2e-86 GNS1/SUR4 membrane protein family (.1) AT3G06460 223 / 3e-72 GNS1/SUR4 membrane protein family (.1) AT1G75000 70 / 6e-14 GNS1/SUR4 membrane protein family (.1) AT4G36830 67 / 6e-13 HOS3-1 GNS1/SUR4 membrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030547 [exp] 337 / 1e-117 AT3G06470 330 / 1e-114 GNS1/SUR4 membrane protein family (.1) Lus10012685 [exp] 197 / 9e-61 AT3G06470 259 / 3e-84 GNS1/SUR4 membrane protein family (.1) Lus10020825 [exp] 196 / 1e-60 AT3G06460 260 / 5e-85 GNS1/SUR4 membrane protein family (.1) Lus10020972 [exp] 81 / 2e-19 AT3G06470 100 / 2e-27 GNS1/SUR4 membrane protein family (.1) Lus10016797 [exp] 80 / 1e-17 AT4G36830 296 / 2e-101 GNS1/SUR4 membrane protein family (.1) Lus10022493 [exp] 80 / 3e-17 AT4G36830 374 / 7e-131 GNS1/SUR4 membrane protein family (.1) Lus10018795 [exp] 42 / 6e-05 AT4G36830 157 / 1e-48 GNS1/SUR4 membrane protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019700 [exp] 272 / 7e-92 AT3G06470 315 / 2e-108 GNS1/SUR4 membrane protein family (.1) Potri.003G019800 [exp] 220 / 2e-71 AT3G06470 280 / 2e-94 GNS1/SUR4 membrane protein family (.1) Potri.007G031500 [exp] 84 / 1e-18 AT4G36830 368 / 6e-129 GNS1/SUR4 membrane protein family (.1) Potri.014G040500 [exp] 72 / 2e-14 AT4G36830 323 / 5e-111 GNS1/SUR4 membrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01151 [flax] [poplar] ELO GNS1/SUR4 family
Representative CDS sequence Show only first row Show all	>Lus10012894 pacid=23162982 polypeptide=Lus10012894 locus=Lus10012894.g ID=Lus10012894.BGIv1.0 annot-version=v1.0 ATGGCGCCGCTCAACCTTCGCTTCAACTCCCCAATTCCTCGCCGCCGCCGTAATCTCCTACCTTATCCTCACCCTCCTCCTCCGGCGCCCCCCTCTCCCT CCACTCGCCGCCTCCCTTTCCCTCCACTCCCACCTCCGCTCCTCAAACCCCTCACCGCCGCACACAGCCTCGTCCTCTTCCTCCTCTCCGCCGTCATGTC CGCCGGCTGCCTCCTCTCCGTCTTATCCTCCGGCAGCAGCATCCGCCACGCCGTCTGCTTCCCTCGGGGCACCGCCAGATCCGGCCCGCTCTTCTTCTGG GCCAACGTCTTCTACCTCTCCAAATACCTAGAATTCGGGGACACGCTCCTGATAATCCTCAGCAAGTCGAATCAACGACTGACGTTCCTCCACGTGTACC ACCACGCCACCGTCGTCGTCATGTGCTATCTCTGGCTCGCCACCGCGCAGTCTCTGTTCCCGGTGGCGCTTGTGACCAACGCCACCGTCCACGTCGTCAT GTATTATTACTACTTCAAATCCGCCGTCGGGTCCCGCCCTAGGTGGAAGAGGCTGGTCACTGATTTCCAGATCGTGCAGTTCGTCTTCAGCTTTGGAATC TCTGGATTGATGCTGTACTACCACTTCGGCGGCGGCGGTTGCTCCGGAATGGCTGGTTGGTGCTTCAATGCCGTTTTCAATGCTTCGCTTTTGGCCCTTT TTGTTGATTTCCATGGGAAGAGCTACAAGAAGAGGAAGGAAATGGAGAAGGAGAAGATTGCTTCCAAGAGCCAATAA
AA sequence Show only first row Show all	>Lus10012894 pacid=23162982 polypeptide=Lus10012894 locus=Lus10012894.g ID=Lus10012894.BGIv1.0 annot-version=v1.0 MAPLNLRFNSPIPRRRRNLLPYPHPPPPAPPSPSTRRLPFPPLPPPLLKPLTAAHSLVLFLLSAVMSAGCLLSVLSSGSSIRHAVCFPRGTARSGPLFFW ANVFYLSKYLEFGDTLLIILSKSNQRLTFLHVYHHATVVVMCYLWLATAQSLFPVALVTNATVHVVMYYYYFKSAVGSRPRWKRLVTDFQIVQFVFSFGI SGLMLYYHFGGGGCSGMAGWCFNAVFNASLLALFVDFHGKSYKKRKEMEKEKIASKSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10012894 [exp]	0	1
AT3G11330		PIRL9	plant intracellular ras group-...		Lus10013689 [exp]	8.5	0.8348
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10016554 [exp]	12.1	0.8232
AT3G11330		PIRL9	plant intracellular ras group-...		Lus10017948 [exp]	14.4	0.8099
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10030547 [exp]	41.3	0.7892
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	50.3	0.7920
AT3G12650			unknown protein		Lus10015695 [exp]	65.7	0.7830
AT1G75760			ER lumen protein retaining rec...		Lus10021097 [exp]	70.2	0.7407
AT4G05460			RNI-like superfamily protein (...		Lus10038528 [exp]	73.0	0.7341
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10005445 [exp]	73.3	0.7796
AT5G39410			Saccharopine dehydrogenase (....		Lus10032995 [exp]	76.9	0.7330

Compare expression of checked genes

Lus10012894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.