Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01790 49 / 9e-07 unknown protein AT2G40475 48 / 1e-06 ASG8 ALTERED SEED GERMINATION 8, unknown protein AT1G06930 42 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030550 [exp] 229 / 7e-76 AT5G01790 50 / 2e-07 unknown protein Lus10034209 [exp] 76 / 5e-17 AT1G06930 52 / 8e-09 unknown protein Lus10029060 [exp] 71 / 6e-15 AT5G01790 46 / 2e-06 unknown protein Lus10025251 [exp] 66 / 5e-13 AT1G06930 47 / 8e-07 unknown protein Lus10009096 [exp] 66 / 8e-13 AT1G06930 47 / 2e-06 unknown protein Lus10009929 [exp] 40 / 0.0009 AT1G06930 61 / 1e-11 unknown protein Lus10014158 [exp] 40 / 0.001 AT1G06930 45 / 8e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107200 [exp] 68 / 1e-13 AT2G40475 49 / 4e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.016G133200 [exp] 66 / 5e-13 AT2G40475 50 / 1e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.013G083101 [exp] 59 / 1e-10 AT2G40475 60 / 3e-11 ALTERED SEED GERMINATION 8, unknown protein Potri.013G156100 [exp] 52 / 8e-08 AT1G06930 / unknown protein Potri.019G127400 [exp] 50 / 2e-07 AT1G06930 / unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10012896 pacid=23163030 polypeptide=Lus10012896 locus=Lus10012896.g ID=Lus10012896.BGIv1.0 annot-version=v1.0 ATGCTGAGTGCAAGACTCACTACCACCACCACCTCCGGCCGCCGCCGAAACGAACAGCCGGCCACCAAACTCCCACAACCGCCGCCGCAAATAGACTCCA AGAGGAGGATAATGTCGAAAGACATAAGCACCCCCAACCCTTCCTTCAGGGTCTACTATGGCGGAGCCTCCGTCGCCGTCCCTTTCACCTGGGAGACCGC GCCAGGGACTCCCAAGCACCACTCTTCCTCGGAATCTGATGATAATCAGATTCCTCTCTCTCCGCCGCCTTCTTTCTACTCCGCCGCCTCCATCCATTCC ACCACCTCTTCTTCACGTAGCTCCTTCTCCTCCAAGAGGTTGTTGTTCCTCCCTCTCGTGAGAGCTCTGTCCGGCCTCCGGACGTCGTCGTCTCGTAGCT TCTCCTCCGCCTCCGCGGCGACGGCGGCCTCTTTCTCGCCGGGGAGATCCGCCGGGTTGGATGGGGGCCGCCATAGGAGGCGCAGGTGCTTCTCTTGCTC CAGATTGCCTGTTGTTCACCATGGGGATGTGAACGATGATGATGACGACGAGGATGAGGAGTTCGAATCGGAAGGGCATAAAGGTAATTACGATGATGTT GGAGGGGGGAGTGAGATTAAGCTGAAGCGGAGGTCGTTGTCGATGGGAGGAGGAGGGTGGGATTCGATTGGACGGATGAGGAATGTCTTGTTTGGATGCG GCGGCGGCGGCCGTAGCTAG
AA sequence Show only first row Show all	>Lus10012896 pacid=23163030 polypeptide=Lus10012896 locus=Lus10012896.g ID=Lus10012896.BGIv1.0 annot-version=v1.0 MLSARLTTTTTSGRRRNEQPATKLPQPPPQIDSKRRIMSKDISTPNPSFRVYYGGASVAVPFTWETAPGTPKHHSSSESDDNQIPLSPPPSFYSAASIHS TTSSSRSSFSSKRLLFLPLVRALSGLRTSSSRSFSSASAATAASFSPGRSAGLDGGRHRRRRCFSCSRLPVVHHGDVNDDDDDEDEEFESEGHKGNYDDV GGGSEIKLKRRSLSMGGGGWDSIGRMRNVLFGCGGGGRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Lus10012896 [exp]	0	1
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10027175 [exp]	1.0	0.9118
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10041362 [exp]	4.2	0.8662
					Lus10022823 [exp]	6.6	0.8529
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10017827 [exp]	6.7	0.8460
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10015712 [exp]	7.3	0.8169
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10039667 [exp]	7.3	0.8647
AT3G11210			SGNH hydrolase-type esterase s...		Lus10028290 [exp]	9.5	0.8124
AT1G55260			Bifunctional inhibitor/lipid-t...		Lus10042449 [exp]	12.5	0.7994
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	12.7	0.8241
					Lus10039807 [exp]	14.3	0.7957

Compare expression of checked genes

Lus10012896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.