Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02750 470 / 2e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 419 / 9e-138 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G56690 395 / 2e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G35030 389 / 6e-127 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G53600 388 / 1e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62260 383 / 2e-124 MEF9 mitochondrial editing factor 9 (.1) AT1G32415 354 / 3e-112 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G16835 338 / 5e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 340 / 2e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 337 / 5e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030549 [exp] 994 / 0 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 439 / 2e-144 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 412 / 1e-134 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012514 [exp] 398 / 5e-131 AT1G62260 689 / 0.0 mitochondrial editing factor 9 (.1) Lus10003857 [exp] 353 / 5e-113 AT4G02750 404 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 345 / 9e-110 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010998 [exp] 340 / 3e-107 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 336 / 2e-105 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015256 [exp] 334 / 3e-105 AT5G46460 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G019900 [exp] 643 / 0 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 460 / 1e-152 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 435 / 6e-144 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G006400 [exp] 429 / 8e-142 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G139200 [exp] 418 / 4e-138 AT1G62260 749 / 0.0 mitochondrial editing factor 9 (.1) Potri.016G038400 [exp] 397 / 2e-130 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G087300 [exp] 369 / 8e-118 AT1G32415 851 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G081700 [exp] 359 / 8e-115 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G354400 [exp] 355 / 2e-113 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 351 / 2e-110 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012897 pacid=23162969 polypeptide=Lus10012897 locus=Lus10012897.g ID=Lus10012897.BGIv1.0 annot-version=v1.0 ATGAAAGAAAGGCTGCTCACCGTCGGCGGGAAAGCAAGCTATGTATACAATCAGAACCTCAAGATCACCCATTACGGGAAAACCGGCCGAGTCAACGACG CCGTTAGAGTATTCTCTCAGATTCCCCGCAAGAACACCGTCACTTACAATTCCCTGATATCCGCCTACGCGAAAAACGGCAGATTAGATCACGCAGGCCA GGTGTTTGATCAAATGCCTCACAGAAACACGGTGTCGTGGAACTCTATGCTCTCTGCCTACTTGCACAATGGAGAAGTTGAGAAAGCCTCTAAGCTGTTT GACGAAATGCCTGAAAGGGACCTGTTCTCATTCACTTTGATGATCACTGTCTACACCCGGAATGGGGAGCTTGAGAATGCTAGGAACGTGTTCAACTTGT TGGGTTCTGATGATAGGAAAGACCCTTCTTGTTGGAACGCATTGATTGCAGGTTACACGAAGAAGAGGAGGTTTGACGAGGCTAAGAGTTTGTTTGATGA GATGCCTGTTAAGAATTCGGTCTCGTGGAACTCGATGCTTGCTGGGTATACCAAGAATGGAGAAATGGAATTAGGGAAGCGGTTTTTCGAGGAAATGGAA GGGCGCAATGAGGTTTTGTATAATTTGATGGTGGATGGGTATGTTGAAGTAGGTGATTTGGATTCTGCTTGGAAGTTGTTTCAAGAAATTCCTGTGCCTA ATGCAGTTTCTTGTGTGACTATGATAACTGGATTTGCACGAAGTGGCAAGGTTTCGGAAGCTAGGAGATTGTTTGAGAAAATCCCGTTCAGAAATTTGTT TACTTGCAATGCTATGCTTTCAGCTTATACTCAGAACGGATGCTTCGAAGAGGCTGAGAAGCTATTTGGAGATATGGCGGAAAAGGATTCTGTGTCCTGG ACTATCATGATCAATGGATATGGCCATGTTGGTAAGCTTGGTAAGGCAAGGGAGTTGCTGAAGAGAATGCCTTTCCGGAACGTTGCAGCCCAAACCGCGA TGATCAATGCTTATGTACAGAACAACGAGATCGACAAAGCTGGTGAAATCTTCAGTTCTATGAAAAATAATGCTGATGAATATGGAAAACCGGATCAGTC AACTTTTGCTTCGGGGCGAAGTGCTTGTGCCGGAATTGCTGCTTTACAACTGGGGAGACAACTTCACCAGCTCGTGGCGAAAAGTGGATTCACTAATGAG TTGTTTGTTAGTAATAGCTTGATCACCGCTTATTCGAAATGCGGAAGGATTTTCGAAGCCGAGCTTGTTTTCCGAGGTATTTCTAATCCTGATGTGGTAT CTTGGAATTCCTTAATCAGCGGGCACGCGTTGAATGGCTACGGAAATAAGGCTCTCAAACTATTCACCACGATGAAGTTGAAAGGTGTGGTTCCTGATTC GATCACGTTCACCGGAGTTTTGTCAGCGTGTGTTCATAATGGGATGGTTGACTTGGGGTTGAAGTTATTCAACAGCATGACAGAAGTGTACTCTGTAAAA CCATTGCCGGAACACTATGGTTGCCTGATCGATTTGCTTGCGCGAGTAGGGCAGTTGGACGTGGCTTTCAAGTTGATAAACGAAGCGAAAGATGAACTGA AGAATGCAGTAGTATGGGGTGCACTGCTCAGTGCCTGCAGGACACACAGGAATCACGAGCTCGAGAGTGTGGCGTCGGAGAAGTTGGCGGAACTAGAACC TCATAAAACGTCCAGTAATTATGTCCTTTTGTCGAGCATTCATGCTGACACTGGAAGATGGGACGAGGTGCGGGAAGTTAGGGAGTTGATGAAAGAAAAG CAACCAGGATGCAGTTGGATTGAAATCCGAAACCAGGTCGAAGCTTTCCTCTCTGTATTATCAAGCCAGCAGCCTAGACTAGCAGATGTTAGTGATGTCC TCAAATCCTTGGCTGCTGAGATGAGAAGCACATCTCATATGTCAGAATCCATGACCATGCCAGCTTGA
AA sequence Show only first row Show all	>Lus10012897 pacid=23162969 polypeptide=Lus10012897 locus=Lus10012897.g ID=Lus10012897.BGIv1.0 annot-version=v1.0 MKERLLTVGGKASYVYNQNLKITHYGKTGRVNDAVRVFSQIPRKNTVTYNSLISAYAKNGRLDHAGQVFDQMPHRNTVSWNSMLSAYLHNGEVEKASKLF DEMPERDLFSFTLMITVYTRNGELENARNVFNLLGSDDRKDPSCWNALIAGYTKKRRFDEAKSLFDEMPVKNSVSWNSMLAGYTKNGEMELGKRFFEEME GRNEVLYNLMVDGYVEVGDLDSAWKLFQEIPVPNAVSCVTMITGFARSGKVSEARRLFEKIPFRNLFTCNAMLSAYTQNGCFEEAEKLFGDMAEKDSVSW TIMINGYGHVGKLGKARELLKRMPFRNVAAQTAMINAYVQNNEIDKAGEIFSSMKNNADEYGKPDQSTFASGRSACAGIAALQLGRQLHQLVAKSGFTNE LFVSNSLITAYSKCGRIFEAELVFRGISNPDVVSWNSLISGHALNGYGNKALKLFTTMKLKGVVPDSITFTGVLSACVHNGMVDLGLKLFNSMTEVYSVK PLPEHYGCLIDLLARVGQLDVAFKLINEAKDELKNAVVWGALLSACRTHRNHELESVASEKLAELEPHKTSSNYVLLSSIHADTGRWDEVREVRELMKEK QPGCSWIEIRNQVEAFLSVLSSQQPRLADVSDVLKSLAAEMRSTSHMSESMTMPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10012897 [exp]	0	1
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	16.2	0.8064
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10006812 [exp]	16.6	0.8074
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	16.6	0.8196
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	17.5	0.7977
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10014211 [exp]	28.3	0.7925
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10031414 [exp]	36.1	0.7951
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031908 [exp]	42.6	0.7776
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	44.7	0.7927
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10011563 [exp]	50.8	0.7548
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10011178 [exp]	52.3	0.7682

Compare expression of checked genes

Lus10012897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.