Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18630 383 / 2e-133 ATUNG uracil dna glycosylase (.1) AT2G10550 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030553 [exp] 521 / 0 AT3G18630 427 / 6e-151 uracil dna glycosylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169600 [exp] 415 / 4e-146 AT3G18630 384 / 3e-134 uracil dna glycosylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03167 [flax] [poplar] UDG Uracil DNA glycosylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10012898 pacid=23162999 polypeptide=Lus10012898 locus=Lus10012898.g ID=Lus10012898.BGIv1.0 annot-version=v1.0 ATGATCACTGTCTTTCACACTCTCCCGCTTCTCCGCCTCCTTCCATCCTCCTCCGACGCTGCCGCAATGAAGAACAAGAAAGCGACGGAGCCGCTATCCT CAGCAGCTTCCTCCAGAACAATCATGGACCTCTTGAACCCATCCAAGCGTCCCAAACTCTCTTCTCCGTCCAAAACCTCCCTCCTACCTCTCGCCAAATT ATCCGCCGCCGGAGATTCATCTTCTCCTCTCTCAACATCCGCCCTCTCCGAAGATCAGAAGTCCCGAGTCGAGTTCAACAAGCTCCGCGCCAAGTCCAAG CGCAACCTCAAGCTCTGCTCCCAACTCGTTTCCAATTCCAAAGAAGAAGGCTTGGGTTATGTAAAATTGGAGGAGCTTCTGGTGGAGGAGACATGGCTGG AAGCTTTACCAGGAGAGCTCGAGAAGCCTTACGCAAAGACTCTCTGCAGTTTCGTCGAGAGCGAGATTCGAGGCGGTGGAGTTCCTATCTACCCGCCTCA GCATTTGGTGTTCAATGCTCTTAACACCACTCCATTTGACAGAGTGAAAGTTGTGATCATTGGACAAGATCCTTATCATGGTCCTGGCCAGGCTATGGGG CTTTCGTTCTCAGTACCGGAAGGCGTCAAGAGTCCTTCGAGCCTTGTGAACATATTTAAGGAGCTTAAGCAGGATGTTGGATGCTCGGTTCCTTCTCATG GTAATCTGGAAAAGTGGGCCATTCAGGGTGTGCTGCTACTCAATGCTGTTCTTACTGTTAGGGAACGTCAGGCGAATTCTCATGCCAAGAAAGGATGGGA ACAATTCACAGATGCTGTTATCAGAACTATTTCACAGAAGAAGAAGGGAGTTATTTTCCTTCTTTGGGGAAACTTTGCTCAAGAGAAATCCAGGTTGATT GATGGGACAAAGCATCACATCCTCAAATCAGCGCACCCCTCTGGTCTCTCAGCACATAAGGGCTTTTTCGGCTGCAGACATTTCTCTCAAGCAAACAAGC TCCTGGAAGAGATGGGAGCTCCGCCGCTAGACTGGCAGCTTTAA
AA sequence Show only first row Show all	>Lus10012898 pacid=23162999 polypeptide=Lus10012898 locus=Lus10012898.g ID=Lus10012898.BGIv1.0 annot-version=v1.0 MITVFHTLPLLRLLPSSSDAAAMKNKKATEPLSSAASSRTIMDLLNPSKRPKLSSPSKTSLLPLAKLSAAGDSSSPLSTSALSEDQKSRVEFNKLRAKSK RNLKLCSQLVSNSKEEGLGYVKLEELLVEETWLEALPGELEKPYAKTLCSFVESEIRGGGVPIYPPQHLVFNALNTTPFDRVKVVIIGQDPYHGPGQAMG LSFSVPEGVKSPSSLVNIFKELKQDVGCSVPSHGNLEKWAIQGVLLLNAVLTVRERQANSHAKKGWEQFTDAVIRTISQKKKGVIFLLWGNFAQEKSRLI DGTKHHILKSAHPSGLSAHKGFFGCRHFSQANKLLEEMGAPPLDWQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Lus10012898 [exp]	0	1
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	2.0	0.9355
AT4G35930			F-box family protein (.1)		Lus10028422 [exp]	3.5	0.9370
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	4.6	0.9395
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039168 [exp]	5.5	0.9361
AT5G01910			unknown protein		Lus10022734 [exp]	6.7	0.9312
AT3G46320			Histone superfamily protein (....		Lus10019956 [exp]	8.5	0.9236
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10020888 [exp]	11.1	0.8819
AT5G52220			unknown protein		Lus10038870 [exp]	13.9	0.8907
AT4G29410			Ribosomal L28e protein family ...		Lus10012915 [exp]	18.0	0.8983
AT5G42330			unknown protein		Lus10013229 [exp]	18.7	0.9202

Compare expression of checked genes

Lus10012898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.