Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19850 396 / 4e-131 Phototropic-responsive NPH3 family protein (.1) AT1G50280 371 / 9e-122 Phototropic-responsive NPH3 family protein (.1) AT3G22104 203 / 6e-58 Phototropic-responsive NPH3 family protein (.1) AT5G03250 173 / 2e-46 Phototropic-responsive NPH3 family protein (.1) AT1G30440 170 / 7e-45 Phototropic-responsive NPH3 family protein (.1) AT5G48800 169 / 9e-45 Phototropic-responsive NPH3 family protein (.1) AT5G66560 166 / 1e-43 Phototropic-responsive NPH3 family protein (.1) AT3G08660 164 / 4e-43 Phototropic-responsive NPH3 family protein (.1) AT1G03010 163 / 1e-42 Phototropic-responsive NPH3 family protein (.1) AT3G44820 161 / 8e-42 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030554 [exp] 1079 / 0 AT3G19850 414 / 5e-138 Phototropic-responsive NPH3 family protein (.1) Lus10034200 [exp] 474 / 4e-161 AT3G19850 390 / 1e-129 Phototropic-responsive NPH3 family protein (.1) Lus10029070 [exp] 196 / 3e-57 AT3G19850 174 / 3e-50 Phototropic-responsive NPH3 family protein (.1) Lus10039710 [exp] 196 / 6e-55 AT3G22104 433 / 9e-148 Phototropic-responsive NPH3 family protein (.1) Lus10018499 [exp] 191 / 2e-53 AT3G22104 420 / 2e-142 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 177 / 1e-47 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026046 [exp] 177 / 3e-47 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 175 / 1e-46 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 173 / 4e-46 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170900 [exp] 439 / 5e-147 AT3G19850 426 / 2e-143 Phototropic-responsive NPH3 family protein (.1) Potri.008G085500 [exp] 425 / 6e-142 AT3G19850 449 / 2e-152 Phototropic-responsive NPH3 family protein (.1) Potri.007G118800 [exp] 236 / 6e-70 AT3G22104 505 / 1e-175 Phototropic-responsive NPH3 family protein (.1) Potri.017G041600 [exp] 223 / 1e-64 AT3G22104 488 / 4e-169 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 186 / 1e-50 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.007G112600 [exp] 184 / 1e-49 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.004G030600 [exp] 177 / 2e-48 AT3G22104 313 / 1e-100 Phototropic-responsive NPH3 family protein (.1) Potri.013G159000 [exp] 177 / 9e-48 AT2G30520 846 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.002G242300 [exp] 177 / 1e-47 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G032100 [exp] 175 / 2e-47 AT3G22104 309 / 4e-99 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10012901 pacid=23162972 polypeptide=Lus10012901 locus=Lus10012901.g ID=Lus10012901.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTGATCTCGCAATCCATGTCAATTCCCAGGAAACCTTCTTCCTCAACGAGAGAATCGTGTGCTTATACTTCGGGAAGCTAAGGAAGATAA TCAAACAAGAGAAGCGACGTAACCAGATCAAGATTTCGGCAATCGAGATGGAAGACTTCCCCGGTGGACCGGCGGGGTTCGAACGGGTCGCCGGATTTTG CTACAACGCAGGCAGAGGAGTCAGCCTCTCCGCCGCCAATGTCGCCCTCTTCCACTGCTCCGCCGTCTTCCTCGGAATGACGACGGAAGGCGGCGGAAAC TTACTCCGGCAGACCGAAGAGTTCCTCGCCGGAATCCTGGACTGGCCGCTCGCCGACGTCGTCGTTTGTCTAAAAACCTGTGACGGGTTCTTCCACTACG CCGATTCGTTGGGGCTCGTTGGGAAGCTGGTTTCCGGGATGCTGGTGAAGATTTCTGATCGGGAGAGAGTTTCGTCGGAGGATTCGGATTGTTCGAAAGC AGAATGGTGGTGGTTCGATGAGTTGGTGGGTCTTTCTCCGATGGTGATTCAAATGATGGTGAAGAAGCTGGGAGCTTTCAGGTCGGAGAATAGCAGCTTG ACACTCACGAGGTTCCTCCTTCATTACCTCAAGAAGAGGGCTCCTCGAGCTAAGTCGATCGGAGCATCGAATTCAGGCTCGGTGCAACTTTCAATCCCGG AATCTAGCCTGGCGGACACAGCGATCCACGGCGTGATCTCATCCCGCAGAAATGCGTTCTCCTACAGAGGATTACTCTGCGTTCTGAGAGTGGTCTCGGC ATTCAACCCAACAGAGAGTTTCAAAGGCGAATTGGAGAGGATGATTGGGGAGTTGCTCGATCAAGCCACCTTGGACGACCTGCTAGTCTGCGGTGGAGGT GCAGGGGTTTACGATGTGGACTTGGTGATAAGACTGGTGAGGATATTTGTGCTGTGTATTAAGGAAGTCAGCAGCCATGGAAGCAGCAGGAAGATGAAGA AGGTGGTGAGGTTGCTTGATAAGTACCTGAGGGAGATATCACCTGATCATACCCTGGAGATGTCCAAGTTCTTGGAGGTTGCAGAGAGCTTGCCTAAGTC TGCTAGGGATTGCTTTGATGGTGTTTACAGAGCCATTGACATCTACCTTGAGTCACATCCGACGCTTTCGTTCGAGGAGAGGTCAAGAATATGCCGATGC CTCGACTTTTCGAGATTGTCGATGGAAGCATGTAAAGAGATAGCTAAGAACCCCAAGATCCCACCCACGGTTGCAGTCCAGGCACTCATGTCCAAGAGAT CATCATCATCTAACCGCAACCACCACCCTTCTGCCGACCAGCCATCGGGTACTCATCCTCAAAAGTCGAAAAGCAGGTCCGTGAGCACTCCAAGCAGGGT ATTAACGAAGAAGGACAACGCAGACTCTAATACCCAGCTGCGGAAGTACTCTTGTAATACTCCCACTCGAAAGTCGAGAAGCGGGCCCACGAATACTCCA AATAGGGTACTAACAAAGAAGGACAACGCAGACTTTGATACCCAGGTGCGGAAGTACTCCTGTACTACTCCTGTTCGAAAGTCGAAAAGCGGGCCCACGA ATACTCCAAGTAGGATATCAATGAAGAAGGACAACACAGACTTTGATACCCAGCCGCAGAAGTACTCTTGTAGTACTCCTGCAGCCAGAGGGAGAGTATC CTCGGTGTCGAAACAGGGGGGAGAAGAAGATGAGGATGAGAAGAGGATGGTGAGGATGCAGAAGAGGGTGGTTGAGTTGGAGAGAGCTTGTCAAGAGATG AAGAACCAGATGTCTAGAATGGAAAATCATGGTGGTGAAGAAGAAGGTTGTAGTAGTAATGGCCTTAAGATTATGACTATGTCTTTTGGGTTTGGTAAGA ACATGGGTAGAATCTGTTACTAA
AA sequence Show only first row Show all	>Lus10012901 pacid=23162972 polypeptide=Lus10012901 locus=Lus10012901.g ID=Lus10012901.BGIv1.0 annot-version=v1.0 MASSDLAIHVNSQETFFLNERIVCLYFGKLRKIIKQEKRRNQIKISAIEMEDFPGGPAGFERVAGFCYNAGRGVSLSAANVALFHCSAVFLGMTTEGGGN LLRQTEEFLAGILDWPLADVVVCLKTCDGFFHYADSLGLVGKLVSGMLVKISDRERVSSEDSDCSKAEWWWFDELVGLSPMVIQMMVKKLGAFRSENSSL TLTRFLLHYLKKRAPRAKSIGASNSGSVQLSIPESSLADTAIHGVISSRRNAFSYRGLLCVLRVVSAFNPTESFKGELERMIGELLDQATLDDLLVCGGG AGVYDVDLVIRLVRIFVLCIKEVSSHGSSRKMKKVVRLLDKYLREISPDHTLEMSKFLEVAESLPKSARDCFDGVYRAIDIYLESHPTLSFEERSRICRC LDFSRLSMEACKEIAKNPKIPPTVAVQALMSKRSSSSNRNHHPSADQPSGTHPQKSKSRSVSTPSRVLTKKDNADSNTQLRKYSCNTPTRKSRSGPTNTP NRVLTKKDNADFDTQVRKYSCTTPVRKSKSGPTNTPSRISMKKDNTDFDTQPQKYSCSTPAARGRVSSVSKQGGEEDEDEKRMVRMQKRVVELERACQEM KNQMSRMENHGGEEEGCSSNGLKIMTMSFGFGKNMGRICY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10012901 [exp]	0	1
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039399 [exp]	1.0	0.9838
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10021904 [exp]	2.0	0.9800
					Lus10032253 [exp]	4.9	0.9786
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	4.9	0.9788
					Lus10024615 [exp]	5.5	0.9774
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	6.3	0.9775
AT3G24750			unknown protein		Lus10038162 [exp]	6.9	0.9728
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024626 [exp]	7.2	0.9695
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	7.7	0.9712
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	7.9	0.9730

Compare expression of checked genes

Lus10012901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.