Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50300 315 / 2e-105 TAF15 TBP-associated factor 15 (.1) AT5G58470 59 / 3e-09 TAF15b TBP-associated factor 15B (.1.2) AT5G16260 54 / 1e-07 ELF9 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT4G19610 53 / 3e-07 nucleotide binding;nucleic acid binding;RNA binding (.1) AT1G67325 44 / 0.0001 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G18630 40 / 0.0005 GR-RBP6 glycine-rich RNA-binding protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030555 [exp] 438 / 2e-152 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1) Lus10042268 [exp] 65 / 4e-11 AT1G50300 220 / 8e-67 TBP-associated factor 15 (.1) Lus10026388 [exp] 64 / 5e-11 AT5G58470 219 / 1e-66 TBP-associated factor 15B (.1.2) Lus10040636 [exp] 54 / 2e-07 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10018277 [exp] 50 / 3e-06 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10026858 [exp] 47 / 2e-05 AT5G16260 566 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10020230 [exp] 47 / 2e-05 AT5G16260 508 / 8e-177 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10037029 [exp] 42 / 0.0006 AT1G67325 276 / 2e-92 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10006412 [exp] 42 / 0.0009 AT1G67325 374 / 1e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170700 [exp] 357 / 2e-121 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1) Potri.008G085400 [exp] 345 / 4e-117 AT1G50300 339 / 6e-115 TBP-associated factor 15 (.1) Potri.001G281300 [exp] 62 / 3e-10 AT5G58470 198 / 1e-58 TBP-associated factor 15B (.1.2) Potri.008G078200 [exp] 57 / 2e-08 AT5G16260 495 / 3e-171 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G076600 [exp] 55 / 4e-08 AT5G58470 199 / 4e-59 TBP-associated factor 15B (.1.2) Potri.010G179000 [exp] 54 / 1e-07 AT5G16260 533 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G203200 [exp] 46 / 2e-05 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1) Potri.003G218600 [exp] 45 / 2e-05 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1) Potri.003G149600 [exp] 47 / 3e-05 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.001G056000 [exp] 42 / 0.0003 AT1G67325 340 / 5e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10012902 pacid=23163036 polypeptide=Lus10012902 locus=Lus10012902.g ID=Lus10012902.BGIv1.0 annot-version=v1.0 ATGGCTTACGCACAGAAAGGCGGACAAACAAATGGATCTGTTTATGTGTGTAACTTGCCTGACGGAACCGACGAGGAAATGCTGGCAGAACATTTTGGTA CCATTGGGTTGCTAAAGAAAGACAAGCGAACTGGTCGTCCCAAAGTATGGCTGTATCGTGACAAAACGACGAATGAGCCGAAAGGGGATGCAACTGTTAC TTACGAGGATCCTCATGCTGCTCTAGCAGCTGTTGAGTGGTTCAACAACAAGGAGTTTCATGGGAGCGTAATCGGAGTCCTCATGGCGGAGTCTAAGAGT AAAGATGATATTCCGTATAGTGCTGTGCCTGATACGCATGCTGCGGCTGTTGATTTTGGTGGGGTGGAGGATGATACTGCGGATGTCAATGGTGGTGGTG GAAGAGGTAGAGGCAGGGGTGGTGATGCTTCGGGGAAAGCGTGGCAACAAGATGGAGATTGGTTGTGTCCGAATACAAGCAGTTGCACAAATGTCAACTT TGCATTTCGGGGGGTGTGCAATCGTTGTGGAACTGCTCGGCCTTCTGGTGCATCTGGCGGTGGTGGAGGGGCAGCTGGTCGTGGTAGGGGTCGAGGAGGT GGTCCGGAACCTGGACGGGCTGTTGGTGCTACTTCGAAGCTCTTTGGTCCAAATGATTGGCCTTGTCCAATGTGTGGCAATATCAACTGGGCAAAGCGTC TGAAGTGCAACGTATGCAACACCAGCAAACCTGGTCAGAATGAGGGCGGTGTCAGAGGTGGGCGTGGAGGTGGCTACAAAGAACTCGACGAAGAGGAGAT AGAGGAAACAAGGCGACGTCGTAAAGAAGCTGAAGATGATGATGGTGAGATGTACGATGAATTCGGAAACTTGAAGAAGAAGTACCGAGTCAAAACCCAG CAACCCGAAGTGGCCAGGACAGTACCCGGTGCAGGGCGTGCAGGATGGGAGGTTGAGGAACTAGGAGGCGGGAGAGAGAAGAGCAGAGAAAGAGGGAGGG ATCGATATAGCAGCAGCAGCAGGGATTGCGACGACAGGGACAGGCGTCGAAGCCGGAGCAGGGAGAGGAATAGGGGGAGGGATCGTGACCGTGATTACGA TTACGATCAAGATAGTCGAGAATATGGGCGCGATAGGGATCGCGAACGTAACAGGTACCGACATTGA
AA sequence Show only first row Show all	>Lus10012902 pacid=23163036 polypeptide=Lus10012902 locus=Lus10012902.g ID=Lus10012902.BGIv1.0 annot-version=v1.0 MAYAQKGGQTNGSVYVCNLPDGTDEEMLAEHFGTIGLLKKDKRTGRPKVWLYRDKTTNEPKGDATVTYEDPHAALAAVEWFNNKEFHGSVIGVLMAESKS KDDIPYSAVPDTHAAAVDFGGVEDDTADVNGGGGRGRGRGGDASGKAWQQDGDWLCPNTSSCTNVNFAFRGVCNRCGTARPSGASGGGGGAAGRGRGRGG GPEPGRAVGATSKLFGPNDWPCPMCGNINWAKRLKCNVCNTSKPGQNEGGVRGGRGGGYKELDEEEIEETRRRRKEAEDDDGEMYDEFGNLKKKYRVKTQ QPEVARTVPGAGRAGWEVEELGGGREKSRERGRDRYSSSSRDCDDRDRRRSRSRERNRGRDRDRDYDYDQDSREYGRDRDRERNRYRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10012902 [exp]	0	1
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	1.4	0.8799
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10030555 [exp]	2.0	0.8369
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10000697 [exp]	2.4	0.8078
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10037950 [exp]	4.9	0.8240
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10038683 [exp]	5.5	0.8099
AT3G07930			DNA glycosylase superfamily pr...		Lus10001994 [exp]	8.5	0.7738
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10011167 [exp]	8.9	0.7674
AT5G16890			Exostosin family protein (.1)		Lus10013787 [exp]	10.2	0.7135
AT5G20130			unknown protein		Lus10037880 [exp]	12.3	0.7360
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	12.3	0.8109

Compare expression of checked genes

Lus10012902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.