Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03050 129 / 4e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030557 [exp] 249 / 7e-87 AT5G03050 135 / 1e-41 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110300 [exp] 141 / 4e-44 AT5G03050 156 / 5e-50 unknown protein Potri.002G184600 [exp] 82 / 8e-21 AT5G03050 0 / 1 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012904 pacid=23163022 polypeptide=Lus10012904 locus=Lus10012904.g ID=Lus10012904.BGIv1.0 annot-version=v1.0 ATGGACGAGAAGGATCAAGATGGGAGCGATGCATCTGCTAAGCGCAGGAACTTGGGAATGGACGAGAAGAATCGAGATGGAGAGTATCCATCGGGTTTAG AGGAGGCTGAGCCAACAGAAGGAAGCATTGTTATTTCGGATGAGATGGAAGCTAACATCTCTCAGATCATGGAGAGGGTCGAACGCTTCACTCAAATGGT TTCTGAGATGCTAGATTCTGGGAAAGCGATGTTTAAGGAGCTAAGCAACGAATTTGAGGAACGACTGGTTGCGATCCACAAGCAACAGATTGACCAGTGG CAAGAAGAAATTAAGGAACTGCGCTTCATTGATGCTTCGAACGAGGAGATCAATGCTGTTCTGCTCAATGCCAGCTACCTGCTTCACAACCCTAAGGGGG AATCTTGA
AA sequence Show only first row Show all	>Lus10012904 pacid=23163022 polypeptide=Lus10012904 locus=Lus10012904.g ID=Lus10012904.BGIv1.0 annot-version=v1.0 MDEKDQDGSDASAKRRNLGMDEKNRDGEYPSGLEEAEPTEGSIVISDEMEANISQIMERVERFTQMVSEMLDSGKAMFKELSNEFEERLVAIHKQQIDQW QEEIKELRFIDASNEEINAVLLNASYLLHNPKGES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03050			unknown protein		Lus10012904 [exp]	0	1
AT5G16100			unknown protein		Lus10004035 [exp]	1.7	0.7402
					Lus10024863 [exp]	4.9	0.7340
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10031978 [exp]	5.0	0.7883
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10026598 [exp]	5.5	0.7283
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10029103 [exp]	20.7	0.7867
					Lus10022950 [exp]	22.8	0.6756
					Lus10027768 [exp]	24.1	0.6226
					Lus10022658 [exp]	26.0	0.6470
AT4G27570			UDP-Glycosyltransferase superf...		Lus10027483 [exp]	26.9	0.6435
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10007402 [exp]	34.6	0.6912

Compare expression of checked genes

Lus10012904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.