Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48520 857 / 0 GATB GLU-ADT subunit B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030559 [exp] 1072 / 0 AT1G48520 850 / 0.0 GLU-ADT subunit B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172700 [exp] 915 / 0 AT1G48520 842 / 0.0 GLU-ADT subunit B (.1.2.3) Potri.010G064700 [exp] 779 / 0 AT1G48520 753 / 0.0 GLU-ADT subunit B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0286 [flax] [poplar] GCS PF02934 [flax] [poplar] GatB_N GatB/GatE catalytic domain CL0279 [flax] [poplar] GatB_YqeY PF02637 [flax] [poplar] GatB_Yqey GatB domain
Representative CDS sequence Show only first row Show all	>Lus10012905 pacid=23163055 polypeptide=Lus10012905 locus=Lus10012905.g ID=Lus10012905.BGIv1.0 annot-version=v1.0 ATGGGTTCCACATTGTTGAGAAACATCCAAGCTCAGCCATTGTTTCAGTATCCATCCGCTTTGTTCAGAAGGAGCAATGGCGTTCTGTATTGCATGACGA CAACAACCACCTCACAGACATCTCCACAGATCAAAGTTTCCCCACAGAAGAAAACCACCACCAATCCACTCGACAAAATCTCGAAAGATTTCGAGGCAGT CATCGGCATAGAAACCCACGTCCAGCTATCAACACTGACAAAGGCATTCTGCAGCTGTCCTTACAGCTATGGTGCTCAGCCCAACACCTGCGTCTGCCCT GTCTGCATGGGTCTACCCGGTGCTCTACCGGTTCTTAACTCGAAAGTCATTGAATCCGCTGTAAAACTCGGCCTTGCCCTCAACTGCAAGCTGTCTTTCA CCTCCAAATTCGACAGGAAGCAGTATTTCTACCCGGACCTTCCGAAAGGTTACCAGATATCTCAGTTCGATATCCCGATAGCGAGTGGCGGGTCCATTGA CCTGGACCTGCCTCTCGAATTCGGTGGAGGTCATAGGAGATTTGGCATCACGAGAATTCACATGGAAGAGGATGCCGGGAAGCTAATGCATTCCGGAAAT GGAAGCTACTCACAGGTTGATTTGAATCGAGCTGGAGTGCCATTGTTGGAGATCGTTTCGGAACCGGATATGAGAACCGGCATTGAAGCTGCTGAGTATG GAGCGGAGATTCAGAGGGTTGTTCGGTATTTGGGGATCAGCAATGGTAATATGCAGGAAGGTTCGCTTCGTTGCGATGTGAATGTCTCGGTTCGACCGAT CGGGCAGGCAGAATTTGGTACAAAGGTTGAGATAAAGAACTTGAATTCGTTTTCTTCAATGAGTAGAGCTATTGACTACGAGATCTCAAGGCAGGTCGGC CTCCACAGTCAGGGCGAACAAGATTCGATCGTACAAGAAACTCGCCTTTGGGAGGATGGCGGTCAGAAAACAGTTACAATGAGGAAAAAGGAAGGGCTTT CGGACTATCGATACTTCCCAGAACCGGATCTTCCTGAAGTTATCCTTACGAAAGAGTTCGTCGATAATGCTAGCAAATCGCTGCCAGAACTTCCGGAAGC GAAACGTAGGAGGTACGAGAAGATGGGACTAAGCATGCAAGATGTGCTTTTCCTTGCGAATGATATGGATGTGGCGGAATTTTTCGACACGACACTTGCA AAGGGAGCTGACGTGAAGCTAGCTGCGAACTGGATCATGGGTGACATGGCTGCTTACTTGAAAAACGAGAAGCTGTCGATAAACGACATCAAACTTGTGC CAGAAGAGCTGGCTGAGCTGATAGCTTCCATCAAAAGCGGGACGATTAGTGGCAAAATTGGGAAAGAGATACTGTTCGAGCTCATGGCTAAAGGTGGGAC GGTGAAGGGAATGATCAAAGAGAAGGATCTTATAACGGATCTTGGTGAGATCGAGAAGATGATTGATAAGGTGATTGCCGAGAACCAGAAGCAGTTACAA CAATATAGATCAGGGAAGACTAAGCTACAGGGTTACTTTGCCGGCCAGGTAATGAAGGAATCGAAAGGCAAGGCGAACCCGGGATTGTTGAACAAGATAC TCATCGAGAAACTGAACGCCAAAGAGTGA
AA sequence Show only first row Show all	>Lus10012905 pacid=23163055 polypeptide=Lus10012905 locus=Lus10012905.g ID=Lus10012905.BGIv1.0 annot-version=v1.0 MGSTLLRNIQAQPLFQYPSALFRRSNGVLYCMTTTTTSQTSPQIKVSPQKKTTTNPLDKISKDFEAVIGIETHVQLSTLTKAFCSCPYSYGAQPNTCVCP VCMGLPGALPVLNSKVIESAVKLGLALNCKLSFTSKFDRKQYFYPDLPKGYQISQFDIPIASGGSIDLDLPLEFGGGHRRFGITRIHMEEDAGKLMHSGN GSYSQVDLNRAGVPLLEIVSEPDMRTGIEAAEYGAEIQRVVRYLGISNGNMQEGSLRCDVNVSVRPIGQAEFGTKVEIKNLNSFSSMSRAIDYEISRQVG LHSQGEQDSIVQETRLWEDGGQKTVTMRKKEGLSDYRYFPEPDLPEVILTKEFVDNASKSLPELPEAKRRRYEKMGLSMQDVLFLANDMDVAEFFDTTLA KGADVKLAANWIMGDMAAYLKNEKLSINDIKLVPEELAELIASIKSGTISGKIGKEILFELMAKGGTVKGMIKEKDLITDLGEIEKMIDKVIAENQKQLQ QYRSGKTKLQGYFAGQVMKESKGKANPGLLNKILIEKLNAKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Lus10012905 [exp]	0	1
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10029841 [exp]	2.6	0.9153
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10036613 [exp]	6.0	0.8928
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	7.2	0.9119
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10014555 [exp]	8.2	0.8779
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	13.0	0.9051
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	14.0	0.9040
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Lus10039040 [exp]	14.3	0.9020
AT5G48730			Pentatricopeptide repeat (PPR)...		Lus10022787 [exp]	14.4	0.8685
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10020579 [exp]	15.5	0.8755
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10023891 [exp]	17.0	0.8945

Compare expression of checked genes

Lus10012905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.