Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42860 161 / 4e-46 zinc knuckle (CCHC-type) family protein (.1) AT1G54930 52 / 4e-07 GRF zinc finger / Zinc knuckle protein (.1) AT5G13920 52 / 4e-07 GRF zinc finger / Zinc knuckle protein (.1) AT4G36020 50 / 1e-06 CSDP1 cold shock domain protein 1 (.1) AT2G17870 46 / 2e-05 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT3G43590 45 / 7e-05 zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030560 [exp] 434 / 1e-151 AT3G42860 258 / 1e-82 zinc knuckle (CCHC-type) family protein (.1) Lus10028449 [exp] 58 / 2e-09 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1) Lus10041902 [exp] 54 / 7e-08 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1) Lus10030564 [exp] 42 / 0.0006 AT3G02820 240 / 3e-78 zinc knuckle (CCHC-type) family protein (.1) Lus10023805 [exp] 42 / 0.0006 AT5G45400 764 / 0.0 Replication factor-A protein 1-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G318100 [exp] 122 / 9e-32 AT3G42860 211 / 8e-66 zinc knuckle (CCHC-type) family protein (.1) Potri.009G112676 [exp] 57 / 2e-08 AT5G13920 116 / 7e-28 GRF zinc finger / Zinc knuckle protein (.1) Potri.T125604 [exp] 55 / 6e-08 AT5G13920 115 / 1e-27 GRF zinc finger / Zinc knuckle protein (.1) Potri.T125504 [exp] 54 / 6e-08 AT5G13920 106 / 1e-25 GRF zinc finger / Zinc knuckle protein (.1) Potri.007G057100 [exp] 48 / 4e-06 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1) Potri.005G112800 [exp] 46 / 2e-05 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.004G193500 [exp] 44 / 0.0001 AT3G43590 299 / 3e-93 zinc knuckle (CCHC-type) family protein (.1) Potri.009G094001 [exp] 42 / 0.0002 AT3G42860 44 / 3e-05 zinc knuckle (CCHC-type) family protein (.1) Potri.009G155500 [exp] 42 / 0.0004 AT3G43590 286 / 9e-89 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF06839 [flax] [poplar] zf-GRF GRF zinc finger CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10012906 pacid=23163034 polypeptide=Lus10012906 locus=Lus10012906.g ID=Lus10012906.BGIv1.0 annot-version=v1.0 ATGGCAGCTACTCGCCATTTCGACGACGAGGACGATGAGTTCCTATTTCAGGTGGCTTCCGCCGAAGCTGAAGCGCTCTCCAGATTCAACTCCGATACCA CCAACAAGCGCCGGAAGTTCGGCGGCGGCTATGATGGAGACGAAGATCAGCAGCTGAAGAAAATGGCTGTGGCGATCGACAGTACGCCGAAGTTGAAGGA AACTGAGAAAGGATCTTACATGGCTGCGCTTAGAGGAAGCAACAGTCTCGCTTGGCAGCAGAATCCGCTGAATCGCTCCGGTTCTAGAGTGAACGCCGTC GCTGGTGGTGGTGGCGGTTCGCTGGTGGTGGTGGCGGTTGGGCGGGCGGCGGCGGTGATTTCAATAAATCCGATCGGCAGCAGCCTTCGGTGTCCGAGAA GGATTGTCCGTGCGGACAGGGAGCTTGTGTTGTTTTCACCGCGAATACTGAAAGGAATCGCGGACGAAAATGGAGGATGTGGTTTCTTCGAGTGGTGTGA CAATGCTTCTGGAAACAATCACAACAGCTCTGCTGCCAGTTCGGATCTTCAATGTCCTTGCGGTGCTGGATTCTGCAAGCTCCTCACTGCAAAAACTGGG AAGAATGTCGGCCAGCAATTCTACTGTTGCCCTGCAAACCAAGAAAGCTCTTGTGGTTTCTTCAAGTGGTTCAGCGAGACTGAAGTGGCAGCCAATAATC CTTCTCATACAAGTACTTACACCCCTTCAAAAGACTTTAGCAACATTGGCTACGGTGCAAGATCCGAGTCTTCTTCCTGCTTCAAATGCAGTAAGCCTGG ACATTGGGCAAAGGACTGCCCAGTCTCCTCTGTACCTGTTCCTACGAGTGCTTACAATGTTTCCAAAGATTCAAGCAACATCGGCTACAGTGCTAGAGCT GAGTCTTCTCCCTGCTTCAAGTGCGGGCAGACTGGACATTGGTCAAAGGACTGCACCATGTCTTCTTCCTCCGGTTCTAGAGCGACAGCATCATTCGGAG GAGGAAGCAGCAGCACTGCCTGTTACAAATGCAATAAGCCTGGGCACTGGGCAAGGGACTGCACCAGTTCGACTCAATCAAACGCTGCAACTCGTAGGTA TTAA
AA sequence Show only first row Show all	>Lus10012906 pacid=23163034 polypeptide=Lus10012906 locus=Lus10012906.g ID=Lus10012906.BGIv1.0 annot-version=v1.0 MAATRHFDDEDDEFLFQVASAEAEALSRFNSDTTNKRRKFGGGYDGDEDQQLKKMAVAIDSTPKLKETEKGSYMAALRGSNSLAWQQNPLNRSGSRVNAV AGGGGGSLVVVAVGRAAAVISINPIGSSLRCPRRIVRADRELVLFSPRILKGIADENGGCGFFEWCDNASGNNHNSSAASSDLQCPCGAGFCKLLTAKTG KNVGQQFYCCPANQESSCGFFKWFSETEVAANNPSHTSTYTPSKDFSNIGYGARSESSSCFKCSKPGHWAKDCPVSSVPVPTSAYNVSKDSSNIGYSARA ESSPCFKCGQTGHWSKDCTMSSSSGSRATASFGGGSSSTACYKCNKPGHWARDCTSSTQSNAATRRY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012906 [exp]	0	1
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10020888 [exp]	2.8	0.8762
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10009538 [exp]	3.3	0.8799
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10039192 [exp]	9.0	0.8757
AT4G12540			unknown protein		Lus10038281 [exp]	14.0	0.8509
					Lus10025836 [exp]	18.5	0.7588
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10017669 [exp]	22.1	0.8721
AT5G03670			unknown protein		Lus10027723 [exp]	24.2	0.8091
AT1G35530			DEAD/DEAH box RNA helicase fam...		Lus10006082 [exp]	24.5	0.8410
AT2G28740		HIS4	histone H4 (.1)		Lus10025964 [exp]	24.6	0.8558
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	24.9	0.8519

Compare expression of checked genes

Lus10012906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.