Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28150 109 / 1e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030561 [exp] 230 / 2e-79 AT1G28150 105 / 4e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G066900 [exp] 103 / 4e-29 AT1G28150 112 / 7e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012907 pacid=23163010 polypeptide=Lus10012907 locus=Lus10012907.g ID=Lus10012907.BGIv1.0 annot-version=v1.0 ATGGTGGGGGTTGTGGCTGCCGGTTCAGCTGTTCCGTCTCTTCTGTTGAGGGATTCCCGACCGTGGATGAACAATTGTGTTGTTGGAACAAGCTTCGGGG ATCGGAAGATTCGCGTTGGTATGGATAATAGAAGAAGAAGGTCGCTACTTAAGGCTGGGCCACCCTCTTCTTTCTTCTGCAACCCTTCTGATGATCCCAT CCTCAATGATGCTCTCAAGGAGCCGGTTGCTTTCCTGGGAGGGATGTTTGCGGGGCTATTGAGGCTCGATCTGAACGAAGAGCCGCTCAAGGAATGGGTG ACAAGAACCGTGGAAGCTTCCGGGATCAAAGAAGAAATAGATGTTGAAGCTGGAAAAGAAGCTGCTAATGGTGATGACTCCCCTCAGCAGATACAGATAG AATGA
AA sequence Show only first row Show all	>Lus10012907 pacid=23163010 polypeptide=Lus10012907 locus=Lus10012907.g ID=Lus10012907.BGIv1.0 annot-version=v1.0 MVGVVAAGSAVPSLLLRDSRPWMNNCVVGTSFGDRKIRVGMDNRRRRSLLKAGPPSSFFCNPSDDPILNDALKEPVAFLGGMFAGLLRLDLNEEPLKEWV TRTVEASGIKEEIDVEAGKEAANGDDSPQQIQIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28150			unknown protein		Lus10012907 [exp]	0	1
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Lus10012528 [exp]	7.3	0.9005
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Lus10041564 [exp]	10.2	0.8824
AT1G28150			unknown protein		Lus10030561 [exp]	14.2	0.8186
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Lus10009622 [exp]	15.7	0.8757
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	18.8	0.8830
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	22.7	0.8825
AT4G16410			unknown protein		Lus10003907 [exp]	25.3	0.8807
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10034272 [exp]	27.1	0.8438
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10027750 [exp]	37.1	0.8677
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10025642 [exp]	38.1	0.8756

Compare expression of checked genes

Lus10012907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.