Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19840 605 / 0 ATPRP40C pre-mRNA-processing protein 40C (.1) AT1G44910 127 / 5e-30 ATPRP40A pre-mRNA-processing protein 40A (.1.2) AT3G19670 103 / 1e-22 ATPRP40B pre-mRNA-processing protein 40B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030562 [exp] 1095 / 0 AT3G19840 671 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10033770 [exp] 100 / 2e-21 AT1G44910 682 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10007723 [exp] 94 / 2e-19 AT1G44910 828 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10018659 [exp] 93 / 2e-19 AT1G44910 834 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10006142 [exp] 62 / 9e-10 AT3G19670 648 / 0.0 pre-mRNA-processing protein 40B (.1) Lus10006305 [exp] 41 / 0.001 AT4G16280 68 / 1e-13 RNA binding;abscisic acid binding (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170400 [exp] 796 / 0 AT3G19840 631 / 0.0 pre-mRNA-processing protein 40C (.1) Potri.009G085400 [exp] 101 / 8e-22 AT1G44910 651 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.014G013100 [exp] 99 / 4e-21 AT1G44910 808 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.001G289800 [exp] 81 / 2e-15 AT1G44910 667 / 0.0 pre-mRNA-processing protein 40A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain CL0584 [flax] [poplar] FF PF01846 [flax] [poplar] FF FF domain
Representative CDS sequence Show only first row Show all	>Lus10012908 pacid=23163012 polypeptide=Lus10012908 locus=Lus10012908.g ID=Lus10012908.BGIv1.0 annot-version=v1.0 ATGGTCACTCCTCCTCCTCCTCCGGTGGCTTCTTCAGTTCAGCAGCAGTTTGTGTGGCCTCCAGGGATCCAGACTGAATTAACGCCTCCAGGAATCGAAA GTAAGAGTCAGCCTATTCAAGCTGAGGTGAAAACTAATGCCTCACCTAATGAGGCGGCCGATGCTTGGACAGCTCACAGGTCGGACACTGGAGTTATGTA CTATTACAATGCTGTTTCAAGAGTTTCCACTTATGAAAAGCCACCTGGGTTTAAATGGGAGGCAGAGAGGGTCGTAAGTCAGCCAACTCCAGTATCAATG GAGAATTTGGCTGGTACTGATTGGGCTTTGGTGACCACAAATGACGGAAAGAAGTATTACTACAACAGCATAACTAAGGTAAGCAGCTGGCAGGTCCCAA ATGAGGTGGTTGAAACGAGAAAGAAGCAGGACGAGATGTTAAAAGAACAAGCAATGTCAGTCCCAGCTCCTGATGTCCTTACTGATACAGGATCTGCTCC AGTCACTATGAATGCTCCGGCAATACACACTGGTGGTCGTGATGCCATAGCTCTGAGAAGCTTAAATGTGCCTGGGGCATCATCTGCATTGGATATGATT AAAAGGAAGCTGCAAGACTCTGGATCTCCGGTAAATTCATCCCATGCTCCAGTTTCATCAGGAGTTGCAACTTCTGATTCTAAAGCTTCAAAATCTGTTG AAGCTACTACAGCTAAAGGCATGACGAGCGATAATAGCAAAGATAAAGTAAAAGCTACCAATGGTGATGGAAATATGTCAGATTCATCTTCAGATTCAGA GGATGAAGACAGTGGTCCAACAAAGGAGGACTGCATCATTCAGTTCAAGGAGATGCTGAAAGAAAGAGGAGTAGCACCATTCTCAAAATGGGATAAAGAG CTTCCGAAGATTCTATTTGATCCACGTTTTAAGGCTATACCAAGCCACTCAGCTCGGAGGTCCTTATTTGAGCACTATGTCAAAACACGTGCTGAGGAGG AGCGCAAGGAAAAACGTGCAGCTCAGAAGGCTGCAATAGAGGGATTTAAGCAGCTACTGGAAGAAGCATCAGAGGATATTGATCAGTATACTGATTATCA AGCATTCAGAAAGATGTGGGGCAATGACCGAAGGTTTGAGGCCCTAGACCGCAAGGACAGAGAGCATCTGCTGAATGAAAGGGTTCTTAGTTTGAAGAAG GCTGCAAAAGAAAAAGCTCATGCTGAGCATTCAGCCACAGCGGCTAGTTTCAAGTCTATGCTTCGAGAGAGAGGAGATATAACCTTGCAATCACGTTGGT CCAGGGTTAAGGATAGTCTAAGAAATGACCCCAGGTACAAGACTATAAAGCATGAGGATCGTGAGGCATTATTCAACGAGTATTTAGCAGACTTAAAAGC AGCTGAAGAGGAAGCCGATCGTGAGTTAAAAGCCAAAAGGGATGAACAGGAAAAGCAGAAAGAAAGGGAGCGAGAGTTGCGGAAGCGAAAGGAAAGAGAT GAACAAGAAATGGAGAGGGTGCGGCTGAAAATTAGGAGGAAGGAAGCAGTTTCGTCTTTTCAGGCTTTGCTCGTCGAAACAATCAAGGACTCTCAGGCAT CTTGGACAGAGTCAAAGGCCAGACTGGAGAAGGATCCGCAAGGACGCTCAGCACACCCTGATTTAGATCCTTCCGAAATGGAGCGACTTTTCCGCGAACA TGTCAAGATGTTGCAAGAGCGATGCCTGCAAGATTTCAAGTCCTTGTTGGCTGAAGTCATAACCGCCGAAGCAGCTGCAAACAAGACGGAAGACGAGAAG ACAGTCCTGGATTCATGGTCAACAGCAAAACGCCTACTGAAAGCCGATCCTAGGTACAATAAGACCCCCAGGAAGGAGAGGGAGATCCTCTGGCGCCGGC ATGCTGGCGATATGCTGAAGAAGCAAAAAGCGGGAGGTGGTTCGGATAAGGAGGACAACAAGAGGCATACCGACTCGAAAAGTAGGAGCTCTACCGACCC GGCAAAGAACCTCTCCTCATCGAGGAGACCTCAAGATCGAAGATGA
AA sequence Show only first row Show all	>Lus10012908 pacid=23163012 polypeptide=Lus10012908 locus=Lus10012908.g ID=Lus10012908.BGIv1.0 annot-version=v1.0 MVTPPPPPVASSVQQQFVWPPGIQTELTPPGIESKSQPIQAEVKTNASPNEAADAWTAHRSDTGVMYYYNAVSRVSTYEKPPGFKWEAERVVSQPTPVSM ENLAGTDWALVTTNDGKKYYYNSITKVSSWQVPNEVVETRKKQDEMLKEQAMSVPAPDVLTDTGSAPVTMNAPAIHTGGRDAIALRSLNVPGASSALDMI KRKLQDSGSPVNSSHAPVSSGVATSDSKASKSVEATTAKGMTSDNSKDKVKATNGDGNMSDSSSDSEDEDSGPTKEDCIIQFKEMLKERGVAPFSKWDKE LPKILFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLEEASEDIDQYTDYQAFRKMWGNDRRFEALDRKDREHLLNERVLSLKK AAKEKAHAEHSATAASFKSMLRERGDITLQSRWSRVKDSLRNDPRYKTIKHEDREALFNEYLADLKAAEEEADRELKAKRDEQEKQKERERELRKRKERD EQEMERVRLKIRRKEAVSSFQALLVETIKDSQASWTESKARLEKDPQGRSAHPDLDPSEMERLFREHVKMLQERCLQDFKSLLAEVITAEAAANKTEDEK TVLDSWSTAKRLLKADPRYNKTPRKEREILWRRHAGDMLKKQKAGGGSDKEDNKRHTDSKSRSSTDPAKNLSSSRRPQDRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	0	1
AT1G73020			unknown protein		Lus10009732 [exp]	1.4	0.9155
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Lus10006271 [exp]	1.4	0.9103
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	1.7	0.9097
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	3.3	0.8879
AT2G47020			Peptide chain release factor 1...		Lus10009980 [exp]	3.5	0.8954
AT1G23890			NHL domain-containing protein ...		Lus10030639 [exp]	4.5	0.8976
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	4.6	0.8944
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	5.7	0.9056
AT5G21080			Uncharacterized protein (.1)		Lus10016400 [exp]	7.6	0.8241
					Lus10002136 [exp]	8.8	0.8509

Compare expression of checked genes

Lus10012908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.