Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11920 649 / 0 glutaredoxin-related (.1) AT4G08550 299 / 3e-92 electron carriers;protein disulfide oxidoreductases (.1) AT2G23700 93 / 3e-19 Protein of unknown function, DUF547 (.1) AT5G66600 91 / 6e-19 Protein of unknown function, DUF547 (.1.2.3.4) AT5G42690 86 / 2e-17 Protein of unknown function, DUF547 (.1.2.3) AT3G13000 84 / 2e-16 Protein of unknown function, DUF547 (.1.2) AT5G60720 82 / 8e-16 Protein of unknown function, DUF547 (.1) AT1G16750 80 / 2e-15 Protein of unknown function, DUF547 (.1) AT4G37080 77 / 1e-14 Protein of unknown function, DUF547 (.1.2.3) AT5G47380 74 / 2e-13 Protein of unknown function, DUF547 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030563 [exp] 1105 / 0 AT3G11920 583 / 0.0 glutaredoxin-related (.1) Lus10034196 [exp] 899 / 0 AT3G11920 688 / 0.0 glutaredoxin-related (.1) Lus10029074 [exp] 883 / 0 AT3G11920 692 / 0.0 glutaredoxin-related (.1) Lus10016786 [exp] 95 / 5e-20 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 91 / 8e-19 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10016114 [exp] 83 / 2e-17 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1) Lus10033328 [exp] 84 / 1e-16 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10021756 [exp] 83 / 4e-16 AT4G37080 488 / 2e-166 Protein of unknown function, DUF547 (.1.2.3) Lus10032768 [exp] 82 / 4e-16 AT4G37080 495 / 3e-171 Protein of unknown function, DUF547 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G097600 [exp] 828 / 0 AT3G11920 708 / 0.0 glutaredoxin-related (.1) Potri.008G144800 [exp] 799 / 0 AT3G11920 707 / 0.0 glutaredoxin-related (.1) Potri.002G091200 [exp] 399 / 4e-129 AT4G08550 637 / 0.0 electron carriers;protein disulfide oxidoreductases (.1) Potri.005G130000 [exp] 90 / 1e-18 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G003900 [exp] 90 / 2e-18 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.007G033100 [exp] 87 / 2e-17 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.014G034800 [exp] 84 / 1e-16 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3) Potri.001G157200 [exp] 82 / 4e-16 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.009G009500 [exp] 80 / 2e-15 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.002G001900 [exp] 79 / 3e-15 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00610 [flax] [poplar] DEP Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) CL0123 [flax] [poplar] PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547 CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10012909 pacid=23163035 polypeptide=Lus10012909 locus=Lus10012909.g ID=Lus10012909.BGIv1.0 annot-version=v1.0 ATGGAAGTAATCACCGGACATGAACGTCAACCTTCTCTCGCCGCCGCAGCCGACACCCACGAGCAAACCAACTCGGAATTGAACTGTTCAGATCAAGTTG ACAGGGCTCCCTCAGAGTCAGCCAAGCCAGAGGAGGCTGAAGTAGTAGTAGTTCAAACGGCGGAGGATGCTGAGGTTCACGATCAAGATCATTCTCAAAT CGAGAAGCACGGAATCGACGGCTACATACAAGTAATCACCCCTGATTCTCACCTCCCGAAGCCAGAGCCGCCTCCAGGACTCTCCAATGAAGAAAACGAA ATCACCAGCTCTGATTTGCTCGGCCGGTCAAAATCCCTAACTGAGACCTTCGGGGCCGCGGTGGACATGCCGTCAATTGGAAAATTCTTCAAAGAGCGGA GCAGCAGCTTATCAGCAATCGCCAAGCGATTCAGCCAAATCAGGAACGATTATCAAGAGGACGAGTATGATTCCGCGTTGAGGAGCAAGAACGAGCTGCT CAATCGAAATCGCAACCGCGACGACTCGGTCTTCGAAACGTCTGAGTTCAACATCTCGGGGCTGAAAGTGGTGGTCCGGATGAAGACTGACGACGGAGTA TTGGCAGGCCGAGTCAGCTTCTTCTCCAGATCAAACTGCAGGGACTGCTCTGCCGTTCGCGATTTCTTCAAACAGAGAGGCCTCCGATTCGTCGAAATCA ACGTCGACGTGTATCCAGAGAGGGAGAAGGAGCTGGTCCAACGGACGGGGACTCCGCGCGTGCCGCAGATATTCTTCAACGAGAAGCTGTTCGGCGGCCT GGTCGCTCTCAACTCGCTGAGGAACAGCGGCGAGTTTGATCGGAGGCTGAAGGAGATGCTAGGGAAGCCTTGCCCGAAGGAAGCCCCTGCTCCGCCCGTG TACGGATTCGACGATCCGGAAGAGGATGATGATCCGTCGGAGGAGGAGGAGGATTTGGTTCGAATTGTGAAAGTGTTAAGGCAGAAGTTGCCGATTGATG ACCGGTTGATGAAAATGAAGATCGTTCGGAACTGCTTCCCCGGCGGTCAGATGGTGGAGGTTCTGATTCAACACTTGGACTGTGGGCGGAAGAAGGCTGT TGAGATCGGGAAGCGGCTGGTTAGGAAGCACTTCATCCACCATGTATTCGGGGAAAACAATTTCGAGGACGGGAATCACCTGTACCGTTTCTTGGAGCAC GAGCCATTCATCCCCAAATCCTACAACTTCCGAGTATCTACAAACGACCGCAGCCCCAAATCTGCAGTTGACGTCGGGAAGAGGCTCTACAAGCTAATGT CGGCAATCCTCGAGTCGTACGCCTCCGATGACAGGCTGCACGTCGATTATGATGGCATCAGCAAAAGCGAGGAGTTCCGAAGATACGCGAACCTCGTAGT GGACCTACAGCGAGTGGATCTAACGGCACTCTCCACACAAGAGAAGACATCATTCTTCTTGAACCTGTACAACGCCATGGCAATACACGCCGTGATCAGG ATAGGCAGCCCACAAGGGCTAACAGACCGGAGATCGTTCTACTCCGATTTCAACTACGTCGTCGGAGGGTCCCCTTTCTCTCTGAACGCGATCAAGAACG GCGTCCTCAGAAACAACAGAAGGTCTCCATACTCGTTCATCAAGCCATTTGGGTCCGGGGACAAACGGTTAGAGATGGTAGTTGTGGACAATAAGGTGAA CCCGTTGGTTCATTTCGGGCTGTGCAACGGGACGAGATCGAGCCCTGCGGTTAGGTTCTTTACCTCGGGAGGAGTGGAGACTGAGCTGAGGAGTGCTGCT AGGGAGTTTTTCAAGAGAGGTGGGATCGATGTTGACTTGGAGACAAGGACGGTTTCTCTGTCTCGTATGATGAAGTGGTTTGGGGGTGATTTCGGGCAAG AGAAGGAGATACTGAAATGGGTGATGAGTTACTTGGATGGGAGCAAAGCAGGTTTGGTGAACCATCTGTTATCTGATGGAGGGCCAGTTCATATTATTTA CCAGAACTACGATTGGTCTCTCAACTGTTAA
AA sequence Show only first row Show all	>Lus10012909 pacid=23163035 polypeptide=Lus10012909 locus=Lus10012909.g ID=Lus10012909.BGIv1.0 annot-version=v1.0 MEVITGHERQPSLAAAADTHEQTNSELNCSDQVDRAPSESAKPEEAEVVVVQTAEDAEVHDQDHSQIEKHGIDGYIQVITPDSHLPKPEPPPGLSNEENE ITSSDLLGRSKSLTETFGAAVDMPSIGKFFKERSSSLSAIAKRFSQIRNDYQEDEYDSALRSKNELLNRNRNRDDSVFETSEFNISGLKVVVRMKTDDGV LAGRVSFFSRSNCRDCSAVRDFFKQRGLRFVEINVDVYPEREKELVQRTGTPRVPQIFFNEKLFGGLVALNSLRNSGEFDRRLKEMLGKPCPKEAPAPPV YGFDDPEEDDDPSEEEEDLVRIVKVLRQKLPIDDRLMKMKIVRNCFPGGQMVEVLIQHLDCGRKKAVEIGKRLVRKHFIHHVFGENNFEDGNHLYRFLEH EPFIPKSYNFRVSTNDRSPKSAVDVGKRLYKLMSAILESYASDDRLHVDYDGISKSEEFRRYANLVVDLQRVDLTALSTQEKTSFFLNLYNAMAIHAVIR IGSPQGLTDRRSFYSDFNYVVGGSPFSLNAIKNGVLRNNRRSPYSFIKPFGSGDKRLEMVVVDNKVNPLVHFGLCNGTRSSPAVRFFTSGGVETELRSAA REFFKRGGIDVDLETRTVSLSRMMKWFGGDFGQEKEILKWVMSYLDGSKAGLVNHLLSDGGPVHIIYQNYDWSLNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11920			glutaredoxin-related (.1)		Lus10012909 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10019525 [exp]	7.1	0.9482
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	10.7	0.9565
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10038983 [exp]	11.1	0.9516
AT1G11300			protein serine/threonine kinas...		Lus10018516 [exp]	19.9	0.9171
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	25.5	0.9460
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10008392 [exp]	26.5	0.9340
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	27.6	0.9407
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	28.4	0.9429
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	28.7	0.9464
AT5G10190			Major facilitator superfamily ...		Lus10038972 [exp]	31.8	0.9077

Compare expression of checked genes

Lus10012909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.