Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60670 225 / 2e-72 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT1G10820 218 / 6e-70 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT3G07565 182 / 1e-55 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) AT1G68160 158 / 4e-46 Protein of unknown function (DUF3755) (.1) AT2G43470 82 / 4e-18 Protein of unknown function (DUF3755) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030566 [exp] 499 / 1e-179 AT1G60670 239 / 1e-78 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10013072 [exp] 359 / 2e-124 AT1G60670 250 / 6e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10029076 [exp] 337 / 7e-116 AT1G10820 245 / 3e-81 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10027045 [exp] 125 / 6e-32 AT2G43400 228 / 1e-71 electron-transfer flavoprotein:ubiquinone oxidoreductase (.1) Lus10025582 [exp] 80 / 9e-18 AT3G07565 160 / 3e-50 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10025581 [exp] 80 / 2e-16 AT3G07565 155 / 2e-46 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10027044 [exp] 44 / 3e-05 AT3G07565 116 / 2e-33 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145100 [exp] 332 / 2e-113 AT1G60670 251 / 4e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Potri.010G097000 [exp] 322 / 1e-109 AT1G60670 243 / 1e-79 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Potri.014G197300 [exp] 171 / 4e-51 AT3G07565 330 / 7e-115 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.017G023300 [exp] 164 / 5e-49 AT3G07565 264 / 3e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.007G132700 [exp] 164 / 1e-48 AT3G07565 265 / 1e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12579 [flax] [poplar] DUF3755 Protein of unknown function (DUF3755)
Representative CDS sequence Show only first row Show all	>Lus10012911 pacid=23163043 polypeptide=Lus10012911 locus=Lus10012911.g ID=Lus10012911.BGIv1.0 annot-version=v1.0 ATGGAAGCTACGGAGTCGAGCATGGGGTTCCACAGGGACGAAACCCTGGGCTCCGTGCTTGGCGGGAGGGCGATTTCGTTTCAATCGGGAGCTATTAACA GTTCTTCGGAGATGATGATTCCCATGGGGAGTTACTTTGCCGGTGGCGGTGGTAGTAGTAGTTGTACGGTGATGAGTAACGGGAACCTTGCCGGTGGTGG GATGGTTCAAGTCCAGGCTGCTTGTAATTCTTCTCCTGCTTCTTCGCTGCTGCTTGATCCTGCTCCTTCATTGAAGAATGATTCTGGATTGGCAGCTGAG TGGTCTGTGGAGGAACAGTACAGGCTGGAGGAAGGTCTTGAGAAGTTCTCTAGCGAACCGAGTATTATGAAATACGTGAAGATCGCTGCCATGATACCTG AGAAGACGGTTAGAGATGTTGCATTGAGGTGTAGATGGATGACGAGAAAGCGAAGAAAAGCTGAAGACCATAATGCTGGCAAGAAGGTCAATAATAGAAA GGATAAACTGGTGGAAGCATCATCAAAGATGAATGTGGTGTCAACTCGGGGGCAGAACTTGTCAGTCTACCCCCTGATGATGCAGACCATGAACCGGACA GCATCTTTGCCTTTCCAAGGATTAAGTGGTACGTCTAGGCATCTTTTGGAGCAGAATGTTCAAGCGTTGAACCAAATTTCAACCAATCTTTCCGTGTTCA AGGTTCAGGAGAACATTGATCTCTTCTGTCGCACAAGGAACAACATTACTGCTGTACTGAATGACATGAGTGAGATGCCTGGTATAATGAGCCTGATGCC ACCACTACCCATATCCATTAATGAGGATCTTGCAGATAGTTTATTTCCTAGTCAGGTAACACATCCATTTTTTATTATCAACAGCACATCCTTTTTAACT GTCAGACAGATGAAGATTGCAATTTCCAACTCATTGTTAATCCACAATCGGTGTGTGATCTCTAAATGGCCAGTCAATGATGTTCGGGCTACCGGGCGGG CACCAGTTGAAGCAAGAGCCAAGGTGCTAGCCAAATGGGAGAGTTTGTCAAGGTTGATTGAATAG
AA sequence Show only first row Show all	>Lus10012911 pacid=23163043 polypeptide=Lus10012911 locus=Lus10012911.g ID=Lus10012911.BGIv1.0 annot-version=v1.0 MEATESSMGFHRDETLGSVLGGRAISFQSGAINSSSEMMIPMGSYFAGGGGSSSCTVMSNGNLAGGGMVQVQAACNSSPASSLLLDPAPSLKNDSGLAAE WSVEEQYRLEEGLEKFSSEPSIMKYVKIAAMIPEKTVRDVALRCRWMTRKRRKAEDHNAGKKVNNRKDKLVEASSKMNVVSTRGQNLSVYPLMMQTMNRT ASLPFQGLSGTSRHLLEQNVQALNQISTNLSVFKVQENIDLFCRTRNNITAVLNDMSEMPGIMSLMPPLPISINEDLADSLFPSQVTHPFFIINSTSFLT VRQMKIAISNSLLIHNRCVISKWPVNDVRATGRAPVEARAKVLAKWESLSRLIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	0	1
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	1.4	0.8611
AT5G50970			transducin family protein / WD...		Lus10043205 [exp]	1.7	0.8700
AT5G64730			Transducin/WD40 repeat-like su...		Lus10003855 [exp]	3.0	0.8564
AT5G52410			unknown protein		Lus10038854 [exp]	4.7	0.8238
AT3G13670			Protein kinase family protein ...		Lus10013737 [exp]	5.5	0.8129
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10040775 [exp]	6.2	0.7752
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	6.3	0.8245
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	7.3	0.8275
AT2G30120			unknown protein		Lus10042267 [exp]	7.5	0.7947
AT4G10925			Nuclear transport factor 2 (NT...		Lus10032407 [exp]	7.7	0.7912

Compare expression of checked genes

Lus10012911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.