Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21200 366 / 8e-127 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G50960 273 / 5e-90 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT5G58660 172 / 7e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 165 / 3e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G05600 160 / 4e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 154 / 2e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G55970 153 / 3e-43 ATJRG21 jasmonate-regulated gene 21 (.1) AT3G47190 151 / 6e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 151 / 1e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G55290 150 / 2e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030567 [exp] 639 / 0 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10029081 [exp] 561 / 0 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10013069 [exp] 541 / 0 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10007640 [exp] 355 / 2e-122 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10006759 [exp] 350 / 2e-120 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10018372 [exp] 347 / 5e-119 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10004808 [exp] 174 / 2e-51 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 170 / 1e-49 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10030934 [exp] 165 / 6e-48 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096800 [exp] 515 / 0 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.008G145300 [exp] 494 / 3e-177 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.004G022800 [exp] 373 / 2e-129 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G026700 [exp] 363 / 6e-126 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G418200 [exp] 339 / 4e-116 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134000 [exp] 302 / 8e-102 AT4G21200 340 / 1e-116 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134100 [exp] 291 / 2e-97 AT4G21200 324 / 2e-110 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G278200 [exp] 212 / 3e-66 AT5G58660 312 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G146000 [exp] 176 / 6e-52 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.016G117100 [exp] 172 / 1e-50 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10012912 pacid=23163038 polypeptide=Lus10012912 locus=Lus10012912.g ID=Lus10012912.BGIv1.0 annot-version=v1.0 ATGCTTAAGACCAACCCTCCTCTCATTCACGGTTACGAGAAGGTCTCGCAGCTACCTCCTTCGGAGCATCAGCATGAGCTTCTCCACTCATCCTCTGTGA TGGAGGAATGCCAGCTACCGCTGATAGACCTCAGCAGACTCAGCAGCTGCGACGAAAGGGAGAGAGCAGGCTGCGCGGCTGCTATATGCAGGGCTTCGTC GGAATGGGGATTCTTTCAGGTGGTTAACCACGGGATCAACCTTGATCTTGTTAGAAAGATGAGGAAAGAGCAGGTTGATTTGTTCCAATTGCCATTTGAT AAGAAAGCAAGTAGCGGGTTGCTCAACAACTCGTACCGTTGGGGGACTCCAACGGCTACTTGTCCTAAGCAGTTCTCGTGGTCCGAAGCTTTCCACGTTC CTTTGTCGATGATTTCGCAGGCGGACTGCTACCAAGAGTTCACTTCTTTGAGGGAAGTGACGGTGGAATTTGCAGCAGCAATGTCGAAGCTAGCGGGATC GCTTGCAGGGATCTTAGTAGAGAACTTGGGGCATTCAAGTGGGGAATTCGAGGACATGTGTGAAGAAAGCAGTTGCTTTCTTAGGCTGAATAGATATCCA GCTTGTCCGGTGTCTCCGGAGATTTTCGGCTTAGTGCCACACACTGACAGTGATTTTCTCACGATTCTGTCTCAAGATGAAGTAGGGGGACTTCAGCTCA TGAAAGATTCCAGATGGGTTGCTGTAAAACCTAATCAAGATGCACTCATAGTGAATATTGGTGATCTTTTTCAGGCATGGAGCAACGACATTTATAAAAG TGTGGAACACAAGGTTATGGCCAATGTTAAGACAGAAAGATACTCAATCGCGTATTTCTTGTGCCCTTCGTACGAGACATCAATAGGGAGTTGCAGAGAA CCATCCAGGTACAGGAGATTCACTTTCGGAGAGTTCAGGAGCCAAATTCAAGCAGAAGTCAAGAACATTGGCTACAAAATTGGCCTGCCGAGCTTCCAAT TATAA
AA sequence Show only first row Show all	>Lus10012912 pacid=23163038 polypeptide=Lus10012912 locus=Lus10012912.g ID=Lus10012912.BGIv1.0 annot-version=v1.0 MLKTNPPLIHGYEKVSQLPPSEHQHELLHSSSVMEECQLPLIDLSRLSSCDERERAGCAAAICRASSEWGFFQVVNHGINLDLVRKMRKEQVDLFQLPFD KKASSGLLNNSYRWGTPTATCPKQFSWSEAFHVPLSMISQADCYQEFTSLREVTVEFAAAMSKLAGSLAGILVENLGHSSGEFEDMCEESSCFLRLNRYP ACPVSPEIFGLVPHTDSDFLTILSQDEVGGLQLMKDSRWVAVKPNQDALIVNIGDLFQAWSNDIYKSVEHKVMANVKTERYSIAYFLCPSYETSIGSCRE PSRYRRFTFGEFRSQIQAEVKNIGYKIGLPSFQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10012912 [exp]	0	1
AT1G60010			unknown protein		Lus10030651 [exp]	10.1	0.8040
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10037295 [exp]	10.5	0.7944
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035625 [exp]	20.4	0.7714
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10034336 [exp]	22.9	0.8247
AT2G24700	B3	REM10	Transcriptional factor B3 fami...		Lus10026264 [exp]	26.7	0.8138
AT5G65060	MADS	FCL3, MAF3, AGL...	MADS AFFECTING FLOWERING 3, AG...		Lus10037038 [exp]	29.8	0.7086
					Lus10033739 [exp]	35.6	0.8010
AT4G13030			P-loop containing nucleoside t...		Lus10025900 [exp]	39.4	0.7808
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10040336 [exp]	49.9	0.7499
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	53.7	0.7480

Compare expression of checked genes

Lus10012912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.