Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26220 278 / 1e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G34050 241 / 9e-80 CCoAOMT1 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G67980 206 / 2e-66 CCOAMT caffeoyl-CoA 3-O-methyltransferase (.1.2) AT1G24735 194 / 7e-62 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G67990 192 / 3e-61 ATTSM1 TAPETUM-SPECIFIC METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G62000 135 / 2e-38 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G61990 127 / 3e-35 OMTF3 O-MTase family 3 protein, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014074 [exp] 239 / 3e-79 AT4G34050 465 / 1e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10019841 [exp] 239 / 4e-79 AT4G34050 466 / 8e-169 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10002837 [exp] 237 / 2e-78 AT4G34050 462 / 2e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10027888 [exp] 237 / 2e-78 AT4G34050 461 / 9e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10009484 [exp] 221 / 6e-70 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034584 [exp] 189 / 1e-59 AT1G67980 299 / 2e-103 caffeoyl-CoA 3-O-methyltransferase (.1.2) Lus10036339 [exp] 136 / 1e-38 AT3G62000 385 / 9e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021804 [exp] 106 / 5e-28 AT1G24735 233 / 3e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010276 [exp] 87 / 3e-20 AT3G62000 269 / 1e-90 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070300 [exp] 299 / 6e-103 AT4G26220 325 / 1e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G304800 [exp] 247 / 2e-82 AT4G34050 455 / 1e-164 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.009G099800 [exp] 243 / 1e-80 AT4G34050 465 / 2e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G136600 [exp] 214 / 9e-70 AT1G67980 337 / 1e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.010G104400 [exp] 201 / 2e-64 AT1G67980 335 / 6e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.002G183600 [exp] 130 / 2e-36 AT3G62000 404 / 3e-143 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01596 [flax] [poplar] Methyltransf_3 O-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10012913 pacid=23158522 polypeptide=Lus10012913 locus=Lus10012913.g ID=Lus10012913.BGIv1.0 annot-version=v1.0 ATGGAAGGTGGTATGACAAGACAATTGCCTTCCAAGGGTTTACTGCAGACGGAAGCTTTATACCAGTATGTACTGGAGACGAGTGTGTTCCCTCGGGAAC CAGAGCCGCTCAAGGAACTAAGAAATTTAACCACCACCCATCCCAGGGCCATGATGGCTACAGCGCCTGATTCTGCACAGTTGATTTCACTGTTGTTGAA ACTGATCAATGCGAAGAAGACCATTGAAGTTGGATTTTTCACTGGCTACTCCCTTCTTCTCACAGCTCTCTCCATCCCTTACGAGGGCAAGATCACTGAG ATAGACATAAACCGGGAATCTTACGAGATAGGACTCCCCGTCATCCGCAAGGCTGGCGTTGAGCGCAAGGTTGATTTTGTGGAATCCGAAGCCTTGCCTG TCCTTGACAAACTACTTGTACAGGAAGGAAGTGAAGGTAGCTATGACTTTGCATACGTTGATGCAAACAAAGGCAATTACTGGAATTACCATGAGAAGCT GATGAAACTAGTTAGGGTGGGAGGGGTAATTGCCTATGACAACACCCTTTGGGGTGGCAGTGTCGCAATGCCTGCTGCTGCTGATTCTATCACCCCAGGG GGGCAGGGAGCTCACTATCCAGTTCAACAAATCGCTCTCTGCAGATCCTCGTGTCGATATTTCACTCACTCCGCTGGGGGATGGAATCACCATTTGCCGC AGAATCTACTGATCGAATGTTCAGGCTTGCTAATCAATGGTAACATACAATGCAATCGGAAAAGAGTCAGAAGTCTCTGA
AA sequence Show only first row Show all	>Lus10012913 pacid=23158522 polypeptide=Lus10012913 locus=Lus10012913.g ID=Lus10012913.BGIv1.0 annot-version=v1.0 MEGGMTRQLPSKGLLQTEALYQYVLETSVFPREPEPLKELRNLTTTHPRAMMATAPDSAQLISLLLKLINAKKTIEVGFFTGYSLLLTALSIPYEGKITE IDINRESYEIGLPVIRKAGVERKVDFVESEALPVLDKLLVQEGSEGSYDFAYVDANKGNYWNYHEKLMKLVRVGGVIAYDNTLWGGSVAMPAAADSITPG GQGAHYPVQQIALCRSSCRYFTHSAGGWNHHLPQNLLIECSGLLINGNIQCNRKRVRSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26220			S-adenosyl-L-methionine-depend...		Lus10012913 [exp]	0	1
AT3G07870			F-box and associated interacti...		Lus10012356 [exp]	3.0	0.7170
					Lus10032915 [exp]	9.3	0.6349
AT2G27410	B3		Domain of unknown function (DU...		Lus10030994 [exp]	11.2	0.6003
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	18.1	0.5972
AT2G22180			hydroxyproline-rich glycoprote...		Lus10019667 [exp]	20.2	0.5703
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	24.6	0.5699
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	25.7	0.5699
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	26.7	0.5699
AT1G09510			NAD(P)-binding Rossmann-fold s...		Lus10023097 [exp]	27.1	0.5542
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	27.7	0.5699

Compare expression of checked genes

Lus10012913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.