Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29410 181 / 2e-59 Ribosomal L28e protein family (.1.2) AT2G19730 174 / 4e-57 Ribosomal L28e protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012915 [exp] 243 / 3e-84 AT4G29410 224 / 1e-76 Ribosomal L28e protein family (.1.2) Lus10032699 [exp] 233 / 7e-80 AT4G29410 219 / 1e-74 Ribosomal L28e protein family (.1.2) Lus10006869 [exp] 179 / 9e-59 AT2G19730 218 / 3e-74 Ribosomal L28e protein family (.1.2.3) Lus10037609 [exp] 177 / 4e-58 AT2G19730 221 / 2e-75 Ribosomal L28e protein family (.1.2.3) Lus10032698 [exp] 0 / 1 ND 134 / 1e-40
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045500 [exp] 189 / 1e-62 AT2G19730 230 / 3e-79 Ribosomal L28e protein family (.1.2.3) Potri.001G194000 [exp] 186 / 2e-61 AT2G19730 227 / 1e-77 Ribosomal L28e protein family (.1.2.3) Potri.006G212501 [exp] 45 / 4e-07 AT4G29410 45 / 2e-07 Ribosomal L28e protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01778 [flax] [poplar] Ribosomal_L28e Ribosomal L28e protein family
Representative CDS sequence Show only first row Show all	>Lus10012914 pacid=23158529 polypeptide=Lus10012914 locus=Lus10012914.g ID=Lus10012914.BGIv1.0 annot-version=v1.0 ATGGCCACAGTTCCAGGGCAGTTGATCTGGGAGGTTGTCAAGAGGAACAACTGCTTCCTCGTTAAACAATTCGGCCGTGGCAATGCCGGCCTCCGATTCA GCAAGGAGAGCAACAATCTCTACAACCTCAACTCCTACAAGTACTCTGGTTTGGCAAACAAGAAAACTGTTTCCATCCAGCCGGAAGGCAAGGATTTAAC TGTTGTACTGTCTACTACCAAGACCAAGAAGCAGAACAAGCCTGCCAATTTGAAGAACAAGTCAGTGATGAGGAAGGAGTTCCACTCCATGGCTAAGGCC GTTGCTAATCAAGTTGGAGATAACTATTACCGTCCGGATCTGAAGAAGGCAGCCCTTGCTAGGCTCAGTGTTGTCCACAAGAGCCTTAAGGTTGCCAAGT CCGGCCCCAAAAAGAGAACTAGGCAGGGGAGGAAGTGA
AA sequence Show only first row Show all	>Lus10012914 pacid=23158529 polypeptide=Lus10012914 locus=Lus10012914.g ID=Lus10012914.BGIv1.0 annot-version=v1.0 MATVPGQLIWEVVKRNNCFLVKQFGRGNAGLRFSKESNNLYNLNSYKYSGLANKKTVSIQPEGKDLTVVLSTTKTKKQNKPANLKNKSVMRKEFHSMAKA VANQVGDNYYRPDLKKAALARLSVVHKSLKVAKSGPKKRTRQGRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29410			Ribosomal L28e protein family ...		Lus10012914 [exp]	0	1
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038635 [exp]	2.6	0.9390
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10027800 [exp]	4.0	0.9527
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	7.6	0.9497
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10007805 [exp]	9.9	0.9490
AT3G11510			Ribosomal protein S11 family p...		Lus10022693 [exp]	10.0	0.9433
AT1G67430			Ribosomal protein L22p/L17e fa...		Lus10006421 [exp]	11.8	0.9442
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10005046 [exp]	12.7	0.9421
AT5G02740			Ribosomal protein S24e family ...		Lus10003991 [exp]	12.7	0.9376
AT5G02610			Ribosomal L29 family protein ...		Lus10019179 [exp]	13.0	0.9374
AT1G48830			Ribosomal protein S7e family p...		Lus10023638 [exp]	15.7	0.9382

Compare expression of checked genes

Lus10012914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.