Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29410 180 / 4e-59 Ribosomal L28e protein family (.1.2) AT2G19730 173 / 1e-56 Ribosomal L28e protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012914 [exp] 243 / 3e-84 AT4G29410 224 / 7e-77 Ribosomal L28e protein family (.1.2) Lus10032699 [exp] 230 / 5e-79 AT4G29410 219 / 1e-74 Ribosomal L28e protein family (.1.2) Lus10006869 [exp] 178 / 3e-58 AT2G19730 218 / 3e-74 Ribosomal L28e protein family (.1.2.3) Lus10037609 [exp] 176 / 1e-57 AT2G19730 221 / 2e-75 Ribosomal L28e protein family (.1.2.3) Lus10032698 [exp] 0 / 1 ND 134 / 1e-40
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045500 [exp] 188 / 2e-62 AT2G19730 230 / 3e-79 Ribosomal L28e protein family (.1.2.3) Potri.001G194000 [exp] 185 / 4e-61 AT2G19730 227 / 1e-77 Ribosomal L28e protein family (.1.2.3) Potri.006G212501 [exp] 45 / 4e-07 AT4G29410 45 / 2e-07 Ribosomal L28e protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01778 [flax] [poplar] Ribosomal_L28e Ribosomal L28e protein family
Representative CDS sequence Show only first row Show all	>Lus10012915 pacid=23158546 polypeptide=Lus10012915 locus=Lus10012915.g ID=Lus10012915.BGIv1.0 annot-version=v1.0 ATGGCCACAGTTCCAGGGCAGTTGATCTGGGAGGTTGTCAAGAGGAACAACTGCTTCCTCGTTAAACAATTCGGCCGTGGCAATGCCGGCCTCCGATTCA GCAAGGAGAGCAACAATCTCTACAACCTCAACTCCTACAAGTACTCTGGTTTGGCAAACAAGAAAACTGTTTCCATCCAGCCGGAAGGCAAGGATTTGAC TGTTGTACTGTCTACTACCAAGACCAAGAAGCAGAACAAGCCTGCCAATCTGAAGAACAAGTCAGTGATGACGAAAGAGTTCCACTCCATGGCTAAGGCC GTTGCTAATCAAGTTGGAGATAACTATTACCGCCCCGATCTGAAGAAGGCAGCCCTTGCTAGACTCAGTGTTGTCCACAAGAGCCTTAAGGTTGCCAAGT CAGGCCCCAAGAAGAGAACTAGGCAGGGGAGGAAGTGA
AA sequence Show only first row Show all	>Lus10012915 pacid=23158546 polypeptide=Lus10012915 locus=Lus10012915.g ID=Lus10012915.BGIv1.0 annot-version=v1.0 MATVPGQLIWEVVKRNNCFLVKQFGRGNAGLRFSKESNNLYNLNSYKYSGLANKKTVSIQPEGKDLTVVLSTTKTKKQNKPANLKNKSVMTKEFHSMAKA VANQVGDNYYRPDLKKAALARLSVVHKSLKVAKSGPKKRTRQGRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29410			Ribosomal L28e protein family ...		Lus10012915 [exp]	0	1
AT3G60660			unknown protein		Lus10010359 [exp]	2.2	0.9190
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005883 [exp]	2.6	0.9342
AT4G23800		3xHMG-box2, AT4...	3xHigh Mobility Group-box2, HM...		Lus10023090 [exp]	2.8	0.9137
AT3G46320			Histone superfamily protein (....		Lus10019956 [exp]	5.5	0.9256
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023457 [exp]	6.6	0.9299
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	7.0	0.9153
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025679 [exp]	9.8	0.8669
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	12.0	0.9244
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	12.5	0.9177
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	12.6	0.9013

Compare expression of checked genes

Lus10012915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.