Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56740 524 / 0 HAG02, HAC7, HAC07, HAG2 histone acetyltransferase of the GNAT family 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032700 [exp] 530 / 0 AT5G56740 332 / 2e-111 histone acetyltransferase of the GNAT family 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G068200 [exp] 614 / 0 AT5G56740 541 / 0.0 histone acetyltransferase of the GNAT family 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF10394 [flax] [poplar] Hat1_N Histone acetyl transferase HAT1 N-terminus
Representative CDS sequence Show only first row Show all	>Lus10012916 pacid=23158559 polypeptide=Lus10012916 locus=Lus10012916.g ID=Lus10012916.BGIv1.0 annot-version=v1.0 ATGGCACAGAAGCAGCAAGCCACCGCAGATCCAGCTTCAAATGACCCCAAGAAGCGAAGGCGTGTTGGATTCGCCAAAGCCGATGCCGGCGTCGAGGCCA ACGACTGCATAACGATTTACTTGGTCTCCAGCAAGGACGAGGTGGGTGCTTCCAATGGTGACCGTATCGCACCAATCGACCTGAACAGTTTTTTTGAGGA GGATGGGAAGATATATGGATACAAACGATTGAGTATTACTGTCTGGATTAGCAGCGTATCATTTCGAACTTATGCTGATATTTCCTACGATAACAAATCT GATGCAGGGAAAGGAATCACAGATCTTAAATCTGCTCTTCAGTTGAGCACCACCCAGAACATCTTTGGTGAGACTCTTGTGGACAGCAAGGAAGACTTCC TTCAGACCTTTTCATGGGATAGTAATTATATCAGCTCTATTATCTCAAGCGGAGAGGTTTTGCAACATCCTGCCACCAACAAGCATGATGGAGATTCTAC TCACTTAGGGAAACTTACTTCAGATCTGGAGGTTGTGCGGATGGTGATGGGAGACCCAGATGCTGGACAACTCTACAGTCGTGTGGTTCCCCTAGTCCTT TTACTAGTTGATGGTAGTAATCCGATTGACGTTACTGATCCAGGATGGGAGCTGTATGTTCTAATTCAAAAGAAGGATCAGGAGAACACCCAATCTATAC TACTGGGGTTTTCTGCTGTGTATCGCTTCTATCACTATCCTGACAGCACTCGACTGCGGCTAGGCCAGATTTTGGTGTTGCCGTGTCACCAAGGGAAGGG CTATGGACGTCACCTTATCGAGACGATTCACAATGTTGCAATATCGGAAGATGTCTATGACTTTACAGTGGAAGAGCCATTGGATACATTCCAACATATC CGCACCTGTGTCGATGTGCAAAGGCTGCTCGGGTTTGAATCAATTCAGGAACCGATCAGTTCAGCTGTTTCGTATCTGAAACATGGAAAACTGTCAAAGA AAGCTCAAGTTCCTCGATTTGTGCCGCCTTCAAGTGCCGTCGAGGACGTCAGAAAGGTGCTGAAAATCAACAAGACTCAGTTAACTCAGTGTTGGGAGAT ACTAGTTTATCTCAAGCTCGAGGCAGTGGAGAAGTACATGGAGGATTTTGCGATGATAATTTCGAATCGGGTTAAAGAAGACATTTTAGGGAAAGATAAT AACGGGAGTGGCGGGAAGCAAGTGATCGAAGTTGAAAGTGAATTCAATCCGGATGTGTCGTTTGTGATGGTGAAGACAAAAGATGGGAAACCAAATGCAG TTGAGATGGATGAGGACCAAAATAACCAACAACAGGAGCAGTTGAAGCAACTGGTTGATGAGCGGCTGAATGAGATTAAGTCGATTGCAGAGAAGGTCAG ACCACTGGCCTGA
AA sequence Show only first row Show all	>Lus10012916 pacid=23158559 polypeptide=Lus10012916 locus=Lus10012916.g ID=Lus10012916.BGIv1.0 annot-version=v1.0 MAQKQQATADPASNDPKKRRRVGFAKADAGVEANDCITIYLVSSKDEVGASNGDRIAPIDLNSFFEEDGKIYGYKRLSITVWISSVSFRTYADISYDNKS DAGKGITDLKSALQLSTTQNIFGETLVDSKEDFLQTFSWDSNYISSIISSGEVLQHPATNKHDGDSTHLGKLTSDLEVVRMVMGDPDAGQLYSRVVPLVL LLVDGSNPIDVTDPGWELYVLIQKKDQENTQSILLGFSAVYRFYHYPDSTRLRLGQILVLPCHQGKGYGRHLIETIHNVAISEDVYDFTVEEPLDTFQHI RTCVDVQRLLGFESIQEPISSAVSYLKHGKLSKKAQVPRFVPPSSAVEDVRKVLKINKTQLTQCWEILVYLKLEAVEKYMEDFAMIISNRVKEDILGKDN NGSGGKQVIEVESEFNPDVSFVMVKTKDGKPNAVEMDEDQNNQQQEQLKQLVDERLNEIKSIAEKVRPLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10012916 [exp]	0	1
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10030540 [exp]	2.2	0.9367
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	3.7	0.9357
AT5G10010			unknown protein		Lus10005778 [exp]	4.9	0.9196
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10032439 [exp]	7.5	0.9329
AT3G25430			Polynucleotidyl transferase, r...		Lus10020388 [exp]	9.0	0.9096
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	9.6	0.9337
AT3G12390			Nascent polypeptide-associated...		Lus10024109 [exp]	10.2	0.9258
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	10.7	0.9153
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10040404 [exp]	11.8	0.8893
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10026219 [exp]	12.6	0.9179

Compare expression of checked genes

Lus10012916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.