Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56730 1502 / 0 Insulinase (Peptidase family M16) protein (.1) AT5G42390 97 / 4e-20 SPP stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) AT3G02090 64 / 5e-10 MPPBETA Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) AT1G06900 56 / 2e-07 Insulinase (Peptidase family M16) family protein (.1) AT3G57470 47 / 9e-05 Insulinase (Peptidase family M16) family protein (.1), Insulinase (Peptidase family M16) family protein (.2), Insulinase (Peptidase family M16) family protein (.3) AT2G41790 44 / 0.0007 Insulinase (Peptidase family M16) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032702 [exp] 170 / 5e-47 AT5G56730 135 / 7e-36 Insulinase (Peptidase family M16) protein (.1) Lus10041263 [exp] 114 / 3e-25 AT5G42390 1789 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Lus10021970 [exp] 102 / 9e-22 AT5G42390 1122 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Lus10042213 [exp] 66 / 2e-10 AT1G06900 1311 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10040885 [exp] 59 / 2e-08 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004939 [exp] 57 / 5e-08 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10040886 [exp] 57 / 5e-08 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10038262 [exp] 45 / 0.0003 AT1G51980 637 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10012926 [exp] 45 / 0.0004 AT3G16480 504 / 3e-173 mitochondrial processing peptidase alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149200 [exp] 99 / 1e-20 AT5G42390 1815 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Potri.002G235700 [exp] 97 / 4e-20 AT5G42390 1822 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Potri.004G118900 [exp] 54 / 4e-07 AT3G02090 822 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.017G092400 [exp] 52 / 2e-06 AT3G02090 832 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.013G154600 [exp] 51 / 5e-06 AT1G06900 1461 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Potri.008G193200 [exp] 45 / 0.0004 AT1G51980 592 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.001G191100 [exp] 44 / 0.0004 AT1G51980 620 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.010G036700 [exp] 44 / 0.0006 AT1G51980 592 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [flax] [poplar] Peptidase_ME PF00675 [flax] [poplar] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [flax] [poplar] Peptidase_ME PF05193 [flax] [poplar] Peptidase_M16_C Peptidase M16 inactive domain
Representative CDS sequence Show only first row Show all	>Lus10012918 pacid=23158569 polypeptide=Lus10012918 locus=Lus10012918.g ID=Lus10012918.BGIv1.0 annot-version=v1.0 ATGGATTTGCTTACGGCGGAGACGTCGCAATTTCCGAAAAAGCACAGATTCCGGTCGCTGAAGCTCGCCAACGTAGACATGGACCAAATCCTGGAAGAAA ATCCCTACGGTGCCGACTATGGCTGCCTCGACAACGGCCTCTTCTACTACGTTCGCCGCAACTCCAAGCCCAGAATGCGCGCTGCTCTGGCGCTCGCCGT GAAGGCTGGCTCAGTTTTAGAAGAGGAGGATGAGAGGGGGGTGGCTCACATAGTGGAGCACCTGGCTTTTAGTGCTACCAAGAATTACACCAATCACGAT ATCGTCAAGTTTCTTGAAAGTATTGGAGCTGAGTTCGGGGCTTGTCAGAATGCTGTCACGTCTGCTGACGAGACTGTGTACGAGTTGCTTGTGCCGGTCG ATAAACCTGAGTTGCTATCACAAGCCATTTCTGTATTGGCTGAATTTAGTACTGAGATTAGGGTTTCCAAGGAGGATTTGGAGAAAGAGAGAGGGGCTGT ATTGGAGGAATACAGAGGGAGTCGGAATGCTAGCGGGCGAATGCAGGATTCTCATTGGACGCTGATGATGGAAGGCTCAAAGTATGCTGGGCGATTACCA ATTGGATTAGAGAAGGTGATTCGTTCAGTTTCCTCCGAGACTGTACATCAATTTTATAAGAAGTGGTACCATCTGCACAATATGGCTGTCATTGCTGTTG GGGATTTTACAGATACCAAGAGCGTTGTGGAGTTGATCAAGACACATTTTGGCCCAAAGTTTTCAGCACTCGAGCGTCCTGATTTACCGATATTTGAAGT TCCATCCCATGAGGAGCCACGTTTTTCATGTTTTGTTGAATCGGAAGCAGCTGGGTCTGCAGTGATGATCAGCTATAAGATGCCAGTTGATGAATTGAAA ACTGTGAAGGACTACAGGGATATGCTCACAGAGTATATGTTTCTCTACGCTCTAAACCAGAGATTCTTTAAGTTATCCCGTAGAGACAATCCGCCCTATT TCTCATGCTCAGCTGCCGCAGATGCTCTAGTTCGTCCGTTAAAGACTTGCATAATGACTTCTTCTTGCAAGGAGAAAGGGACTTTGGATGCCTTACAATC AATGCTACTTGAGGTTGCAAGGGTTCGTTTACATGGGTTTTCAGAGCGTGAAATTAGTATCGTGAGAGCTTTAATGATGGCTGAAATTGAATCTGCCTAT CTGGAGCGAGATCAGATGCAGTCAACCAACTTGAGAGATGAATACTTACAACATTTTCTCCGAGGTGAGCCAGTTGTTGGGATTGAATATGAGGCTCAAC TTCAAAAAACTATTCTTCCACAGATATCGGCAGTTGAGGTGTCAAAATATGCTGAGAAGTTACGGACTTCTTGTAGCTGTGTCATAAAGACAGTGGAACC CCGGGCTTCTGCAGCACTTGATGGCCTAAAAACTGTCTTACAGGAAATTAATATGCTTGAGAAAGAAAAAAGCATAACTCCTTGGGATGATGAGCATATT CCAGAAGAAATTGTCAGTCTGAAGCCAATTCCAGGGCATGTTGTCGATCAGTTTGAGTACTCGAGCATTGGAGCTAGTGAGCTAATTCTGTCCAATGGCA TGCGAGTTTGCTACAAGTGTACAGATCTACTTGATGACCAGGTTCTTTTCACAGGGTTCTCATATGGGGGTCTCTCAGAGATTCCAGAAAGTGATTATTT TTCATGCTCAATGGGATCAACTATTGCTGGAGAAATTGGGGTATTTGGCTATAAACCGCCAGTGTTAATGGATATGCTTGCTGGTAAGAGAGTTGAAGTG AGTACAAAGCTTGGAGCCTACATGAGAAGTTTCACCGGTGACTGTTCTCCCTCAGATTTGGAAACTGCTATGCAGCTTGTCTATCAACTATTTACAACAA CTTTAACACCGGGAGAAGAAGATGTTAAAATTGTGATGCAAATGGCAGAGGAAGCTGTTCGTGCTCAAGAGAGGGATCCGTATACAGCATTTGCAGATCG AGTGAAAGAGATTAACTATGGAAACTCCTACTTTTTTAGACCCATAAAAATATGTGACCTAAAAAAGGTTGATCCACTAAAAGCTTGTGACTATTTCAAC AAGTGTTTTAAGGATCCCTCGACTTTCACTGTTGTAATTGTCGGGAATCTTGATCCAGCTGTTGCAATTCCTTTGATTTTGCAGTATCTGGGTGGTATAA CCAAGCCTCCAGAACCAATTCTCCAGTATAGCCGGGATGACCTCAAAGGCTTACCTTTCACATTTCCAACAAGCATAATCAGAGAAGTGGTGCGTAGCCC TATGGTAGAAGCGCAATGCTCAGTTCAACTGAGCTTTCCTTTGGTGCTGAAGAATGGAGCAATGGTGGAAGAGGTACACTCAGTTGGGTTCTTGAGCAAA CTTCTTGAAACAAAAATATTGCAGATCCTCCGATTCAAGCACGGACAGATATATTCTGCTGGTGTCTCGGTGTTCCTTGGTGGTAATAGACCGTCAAGAT CTGGCGATATACGTGGAGACATCAGCGTAAATTTTTCTTGTGATCCTGGAAGTTCATCAAAGTTGGTGGATATTGCTTTGGACGAAATACTACGCATTCA AGAAGAAGGGCCTTTGGATGAGGACCTTGCTACTGTACTTGAGCTTGAGCAGAGAGCCCATGAAAATGGATTGCAGGAGAACTACTACTGGCTGGAAAGA ATTTTACGTAGCTACCAGTCAAGAATCTATAGCGGTGATATTGGTGCTTGCTTTGAGCTTCAAGATGAAGGTCGTTGTAAAGTTCGAGATTCACTTGCAC CTTCATCAGCACGATCGACATTACAGAACATTTTGCCGTACCCCTGCAAGAAGCAGTACACTGCAGTGATTCTGATGCCTCAGATGTCTCGTATTCAGTT GTTAAGATCGTACTTCCAGTCCACTCAACTTAGTTGCTCTAGAGACGCCAAGATCATAGCCGCCATTGCTGGTCTGACGGTGGTTGCTGTGAGCTTCTGG AGATATTCAAGGAGTACTCTGAGATCTTAG
AA sequence Show only first row Show all	>Lus10012918 pacid=23158569 polypeptide=Lus10012918 locus=Lus10012918.g ID=Lus10012918.BGIv1.0 annot-version=v1.0 MDLLTAETSQFPKKHRFRSLKLANVDMDQILEENPYGADYGCLDNGLFYYVRRNSKPRMRAALALAVKAGSVLEEEDERGVAHIVEHLAFSATKNYTNHD IVKFLESIGAEFGACQNAVTSADETVYELLVPVDKPELLSQAISVLAEFSTEIRVSKEDLEKERGAVLEEYRGSRNASGRMQDSHWTLMMEGSKYAGRLP IGLEKVIRSVSSETVHQFYKKWYHLHNMAVIAVGDFTDTKSVVELIKTHFGPKFSALERPDLPIFEVPSHEEPRFSCFVESEAAGSAVMISYKMPVDELK TVKDYRDMLTEYMFLYALNQRFFKLSRRDNPPYFSCSAAADALVRPLKTCIMTSSCKEKGTLDALQSMLLEVARVRLHGFSEREISIVRALMMAEIESAY LERDQMQSTNLRDEYLQHFLRGEPVVGIEYEAQLQKTILPQISAVEVSKYAEKLRTSCSCVIKTVEPRASAALDGLKTVLQEINMLEKEKSITPWDDEHI PEEIVSLKPIPGHVVDQFEYSSIGASELILSNGMRVCYKCTDLLDDQVLFTGFSYGGLSEIPESDYFSCSMGSTIAGEIGVFGYKPPVLMDMLAGKRVEV STKLGAYMRSFTGDCSPSDLETAMQLVYQLFTTTLTPGEEDVKIVMQMAEEAVRAQERDPYTAFADRVKEINYGNSYFFRPIKICDLKKVDPLKACDYFN KCFKDPSTFTVVIVGNLDPAVAIPLILQYLGGITKPPEPILQYSRDDLKGLPFTFPTSIIREVVRSPMVEAQCSVQLSFPLVLKNGAMVEEVHSVGFLSK LLETKILQILRFKHGQIYSAGVSVFLGGNRPSRSGDIRGDISVNFSCDPGSSSKLVDIALDEILRIQEEGPLDEDLATVLELEQRAHENGLQENYYWLER ILRSYQSRIYSGDIGACFELQDEGRCKVRDSLAPSSARSTLQNILPYPCKKQYTAVILMPQMSRIQLLRSYFQSTQLSCSRDAKIIAAIAGLTVVAVSFW RYSRSTLRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56730			Insulinase (Peptidase family M...		Lus10012918 [exp]	0	1
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10008998 [exp]	2.0	0.8612
AT1G63490			transcription factor jumonji (...		Lus10008495 [exp]	2.0	0.8773
AT1G63490			transcription factor jumonji (...		Lus10008531 [exp]	2.0	0.8739
AT4G09680		ATCTC1	conserved telomere maintenance...		Lus10032880 [exp]	5.2	0.8354
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	5.9	0.8464
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	6.9	0.8446
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10001005 [exp]	7.5	0.8627
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10031647 [exp]	8.1	0.8485
AT1G55750			BSD domain (BTF2-like transcri...		Lus10007089 [exp]	8.4	0.8347
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	11.0	0.8321

Compare expression of checked genes

Lus10012918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.