Plant FIBer expression Database

Lus10012919 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26240 246 / 5e-84 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032703
[exp]
168 / 4e-54 AT4G26240 101 / 9e-28 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G153800
[exp]
263 / 3e-90 AT4G26240 254 / 7e-87 unknown protein
PFAM info
Representative CDS sequence
>Lus10012919 pacid=23158518 polypeptide=Lus10012919 locus=Lus10012919.g ID=Lus10012919.BGIv1.0 annot-version=v1.0
ATGAAGAAGTTGGCAAGAAGTTTGCGGAAATCTCGCGACGACGATGAATTGTCTCTTCCAACCCATGAAGATCCCGATGACTCTCGCCCCATGGATCCCC
AAGAGCAAGAAGAACTAGTTCGGTCCCTTGAAAGGGCACAAGCTCAGCAATCTCTGCTATGGACGAGAGTGTTCGCTGGGATTCTCCTCTGCTATGCTGC
CTTCCTAGTGTATTCAATCTACCAGCAACTCGCTTCTCCCTGGGAACTGCGCTATCATGCTTACTTCATGGAAGATATTCCTTCATGGATAGTAATTTCT
GCAGATTGGATAGCAGTTTTCGTATGCTCCGTCGCCATTGCTGGGATACTTAACCATAGAAGAAGATGGATTTGGTACTCCTGCTTTACTGCCTTTTTCC
CGGCTTCGTTTTGGCTATATTACATGCTCAGGTTGCCCAGATTCAGGTGGGATGTCATATGGCTTCCTCTCGGGCCTCTTTGTGCATCTTCTGTTTGCCT
TTACGTTCATCACTTGCTCACCGAGTCATCAGAAGAGGTGAAGAAACTCAGAAGCTACATGTATTCCTACAAAGCCACATAG
AA sequence
>Lus10012919 pacid=23158518 polypeptide=Lus10012919 locus=Lus10012919.g ID=Lus10012919.BGIv1.0 annot-version=v1.0
MKKLARSLRKSRDDDELSLPTHEDPDDSRPMDPQEQEELVRSLERAQAQQSLLWTRVFAGILLCYAAFLVYSIYQQLASPWELRYHAYFMEDIPSWIVIS
ADWIAVFVCSVAIAGILNHRRRWIWYSCFTAFFPASFWLYYMLRLPRFRWDVIWLPLGPLCASSVCLYVHHLLTESSEEVKKLRSYMYSYKAT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G26240 unknown protein Lus10012919
[exp]
0 1
AT5G47840 AMK2 adenosine monophosphate kinase... Lus10009477
[exp]
2.0 0.8330
AT2G30530 unknown protein Lus10034444
[exp]
3.0 0.8089
AT5G41610 ATCHX18 cation/H+ exchanger 18, ARABID... Lus10017541
[exp]
6.0 0.7942
Lus10012012
[exp]
6.7 0.7971
AT3G58670 Protein of unknown function (D... Lus10033603
[exp]
9.1 0.8241
AT4G11560 bromo-adjacent homology (BAH) ... Lus10008492
[exp]
10.8 0.7984
AT3G02220 unknown protein Lus10019392
[exp]
14.7 0.7927
AT2G18470 AtPERK4, PERK4 proline-rich extensin-like rec... Lus10014318
[exp]
15.2 0.7474
AT3G04670 WRKY ATWRKY39, WRKY3... WRKY DNA-binding protein 39 (.... Lus10014745
[exp]
18.8 0.7843
AT3G10490 NAC ANAC051, ANAC05... Arabidopsis NAC domain contain... Lus10038670
[exp]
20.5 0.7791

Lus10012919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.