Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56680 788 / 0 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 762 / 0 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G17300 422 / 1e-142 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT3G07420 402 / 8e-134 ATNS2, SYNC2_ARATH, NS2 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) AT5G38750 94 / 1e-22 asparaginyl-tRNA synthetase family (.1) AT4G31180 92 / 2e-19 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT4G26870 83 / 1e-16 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G68420 53 / 1e-08 Class II aaRS and biotin synthetases superfamily protein (.1) AT4G33760 42 / 0.0007 tRNA synthetase class II (D, K and N) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032704 [exp] 1025 / 0 AT5G56680 907 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10025874 [exp] 413 / 1e-137 AT3G07420 604 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10007470 [exp] 394 / 1e-130 AT4G17300 873 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10028945 [exp] 353 / 1e-116 AT4G17300 740 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10008180 [exp] 288 / 3e-95 AT5G56680 268 / 2e-87 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10038228 [exp] 254 / 2e-80 AT3G07420 353 / 7e-118 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10028555 [exp] 81 / 6e-16 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10018862 [exp] 77 / 9e-15 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 67 / 4e-13 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070000 [exp] 865 / 0 AT5G56680 931 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G153900 [exp] 854 / 0 AT5G56680 929 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.017G028800 [exp] 424 / 3e-143 AT4G17300 888 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.007G129800 [exp] 422 / 1e-142 AT4G17300 872 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.002G249700 [exp] 421 / 3e-140 AT3G07420 654 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Potri.006G085400 [exp] 86 / 2e-17 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00152 [flax] [poplar] tRNA-synt_2 tRNA synthetases class II (D, K and N) CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10012920 pacid=23158545 polypeptide=Lus10012920 locus=Lus10012920.g ID=Lus10012920.BGIv1.0 annot-version=v1.0 ATGGGCGACACGACGACGGCGCCACCGGTGACGGAGCTCGCCAGCGCAACGCTAAGCGAATCCGCATCAGCCCTCAAGCATCCGTTTTCCGATCGGGTCC CCATCCGATCCATCGTTTCCCGCCCCGATGGTGGAGCTGGACTCGCTGGACAGCAAGTCCGCGTCTGCGGATGGGTCAAGACCGGCAGGATGCAAGGCAA GAACACTTTCGCCTTCTTGGAAGTCAACGACGGGTCATGCCCAGCGAATCTACAGGTTATGGTGGATGCTGCTCTAGCCGATCTTGGCCCTCTGGTGGCC ACAGGGACCTCCGTCTCCGTTGAGGGTGTGCTGAAGTTGCCCCCCGAGGGCACAAAGCAGAAGGTTGAGCTCCGGGTCGAGCAGGTTCTCCATGTCGGGC CGGTCGATCCGGCTAAGTACCCGATTCCCAAGACCAAGCTGACCCTGGAGTTTTTGAGAGATCGCATCCACTTTCGTCCAAGAACTAACACAATATCAGC AATAGCTCGAATTCGTAACGCACTTGCTTTTGCCACGCATTCCTTCTTTCAAGAGAATGGGTTTCTGTATGTGCATACCCCAATTATCACCACTAGCGAT TGCGAAGGTGCTGGTGAAATGTTCCAAGTCACCACCATAATCAGTGAAGCTGAGAAGCTGGAGAAAGATTTGATTAAGAATCCTCCTCCTTCAGAGGCTG ACATTGAGGATGCTAAGCTTGTTGTGAAGCAGAAAGCAGAAGTTGTGGGCCAACTCAAGGCTGCTAAAGCTGACAAGAAGGAAATTGTTGCTGCAGTTGC TGAGATGAACAAAGGGAAAGAGATTGTTTCCAAGTTGGAAGAAAGAGCTAACCTTAAACCTGGCATCCCTCAGAAGGAGGGGAAGATTGATTATGCGGCT GATTTCTTTGGTCGTCAAGCTTTCTTGACTGTTTCTGGTCAGCTACAAGATGACATGAACTGTGCAGAAGCATACGTAAAGTATATGTCCCAATGGCTGC TTGAGAAGTGCTACGATGACATGGAGCTTATGGCGAAGCTTTATGACAAAGGCTGCATTGACCGTCTAAGAATGGTGGCATCAACTCCTTTTGAGCGCAT CTCATATACAGAGGCAGTGAAAATACTTGAGGAGGCTGTGAAGGATGGCAAGAAGTTTGATAACGAAGTTGAATGGGGGATTGATCTGGCATCTGAACAT GAGAGGTTCTTAACAGAAGTCAAGTTTCAGAAGCCGGTGATTGTCTACAATTACCCAAAAGGAATCAAAGCCTTCTACATGAGGCTGAACGATGATTCGA AGACAGTGGCTGCCATGGATGTCCTTGTACCAAAGGTAGGAGAATTGATTGGTGGAAGTCAAAGGGAGGAGCGATATGAAGTGATCAGAGATAGGATTCT GGAGATGGGGCTGCCACTGGAGCCATACGAGTGGTACCTTGACCTCCGCCGATTTGGGACCATAAAGCACAGTGGGTTCGGGTTAGGGTTTGAAAGGATG ATACTGTTTGCGACCGGCATTGACAACATCAGAGATGTAATTCCGTTCCCAAGATACCCAGGAAGAGCCGATCTGTGA
AA sequence Show only first row Show all	>Lus10012920 pacid=23158545 polypeptide=Lus10012920 locus=Lus10012920.g ID=Lus10012920.BGIv1.0 annot-version=v1.0 MGDTTTAPPVTELASATLSESASALKHPFSDRVPIRSIVSRPDGGAGLAGQQVRVCGWVKTGRMQGKNTFAFLEVNDGSCPANLQVMVDAALADLGPLVA TGTSVSVEGVLKLPPEGTKQKVELRVEQVLHVGPVDPAKYPIPKTKLTLEFLRDRIHFRPRTNTISAIARIRNALAFATHSFFQENGFLYVHTPIITTSD CEGAGEMFQVTTIISEAEKLEKDLIKNPPPSEADIEDAKLVVKQKAEVVGQLKAAKADKKEIVAAVAEMNKGKEIVSKLEERANLKPGIPQKEGKIDYAA DFFGRQAFLTVSGQLQDDMNCAEAYVKYMSQWLLEKCYDDMELMAKLYDKGCIDRLRMVASTPFERISYTEAVKILEEAVKDGKKFDNEVEWGIDLASEH ERFLTEVKFQKPVIVYNYPKGIKAFYMRLNDDSKTVAAMDVLVPKVGELIGGSQREERYEVIRDRILEMGLPLEPYEWYLDLRRFGTIKHSGFGLGFERM ILFATGIDNIRDVIPFPRYPGRADL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10012920 [exp]	0	1
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10032704 [exp]	1.0	0.9280
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10022870 [exp]	4.6	0.9128
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	4.7	0.9195
AT4G30840			Transducin/WD40 repeat-like su...		Lus10007707 [exp]	4.9	0.8985
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	6.5	0.8907
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10005530 [exp]	6.7	0.8985
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	8.4	0.8804
					Lus10013718 [exp]	8.7	0.8597
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10018778 [exp]	10.4	0.8919
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10018580 [exp]	11.5	0.8656

Compare expression of checked genes

Lus10012920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.