Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29160 243 / 6e-82 SNF7.1 SNF7 family protein (.1.2.3) AT2G19830 236 / 5e-79 VPS32, SNF7.2 SNF7 family protein (.1) AT5G09260 51 / 9e-08 VPS20.2 vacuolar protein sorting-associated protein 20.2 (.1) AT5G63880 49 / 5e-07 VPS20.1 SNF7 family protein (.1.2) AT3G10640 45 / 1e-05 VPS60.1 SNF7 family protein (.1.2) AT5G04850 45 / 2e-05 VPS60.2 SNF7 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032705 [exp] 294 / 8e-102 AT2G19830 321 / 1e-112 SNF7 family protein (.1) Lus10034131 [exp] 48 / 2e-06 AT5G04850 374 / 3e-133 SNF7 family protein (.1.2) Lus10043454 [exp] 48 / 2e-06 AT5G04850 383 / 6e-136 SNF7 family protein (.1.2) Lus10008953 [exp] 47 / 4e-06 AT5G04850 404 / 9e-145 SNF7 family protein (.1.2) Lus10028867 [exp] 47 / 5e-06 AT5G04850 399 / 7e-139 SNF7 family protein (.1.2) Lus10037699 [exp] 45 / 1e-05 AT5G09260 340 / 3e-120 vacuolar protein sorting-associated protein 20.2 (.1) Lus10015693 [exp] 44 / 2e-05 AT5G09260 333 / 2e-117 vacuolar protein sorting-associated protein 20.2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G069900 [exp] 244 / 2e-82 AT4G29160 222 / 1e-73 SNF7 family protein (.1.2.3) Potri.006G154000 [exp] 227 / 1e-75 AT4G29160 224 / 3e-74 SNF7 family protein (.1.2.3) Potri.005G067700 [exp] 50 / 2e-07 AT5G09260 248 / 7e-84 vacuolar protein sorting-associated protein 20.2 (.1) Potri.007G101500 [exp] 50 / 2e-07 AT5G09260 255 / 1e-86 vacuolar protein sorting-associated protein 20.2 (.1) Potri.008G018300 [exp] 49 / 7e-07 AT3G10640 404 / 5e-145 SNF7 family protein (.1.2) Potri.010G242700 [exp] 45 / 8e-06 AT3G10640 405 / 1e-145 SNF7 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10012921 pacid=23158552 polypeptide=Lus10012921 locus=Lus10012921.g ID=Lus10012921.BGIv1.0 annot-version=v1.0 ATGTTTACTCGTATATTTGGGAAGCCCAAGCAAGAAAGCAATGCCCTAGCCACCTTGGACAAATTAAATGAGACACTTGAAATGCTCGAAAAAAAGGAAA AGGTTTTGGTAAAAAAAGCTGGTCAGGAAGTTGAGAAGGCTAGAGAGTATGCACGGGGCGGAAACAAAAGGGCTGCTATTCAGTCCTTAAAGAGGAAGAG GTTATATGAACAGCAAATTGAACAACTTGGAAATTTCCAACTGCGCATTCACGATCAGATGATAATGTTAGAGGGTGCAAAAGCCACAACTGAAACTGTA GATGCATTGAGAACTGGAGCATCTGCAATGAAGGCAATGCAGAAAGCAACGAACATTGATGATGTTGACAAGACTATGGACGAGATCAACGAACAAACTG AGAACATGAAACAGATCCAGGAGGCATTGTCAACTCCAATTGGTGCTGCAGCTGATTTCGATGAAGATGAATTGGAAGCTGAACTTGAAGAATTAGAAGG TGCCGAGTTAGAAGAGCAGCTTCTACAACCTGCAACCACAGCTCCTGCAGCTCCAGTCCACGTGCCAGCTGGAAAACAACCTGCACGCGCAGCTCCTCAA AGAAAGAATACTAAGGAGGAAGATGAACTTGCTGCCTTGCAGGCTGAGATGGCACTCTAA
AA sequence Show only first row Show all	>Lus10012921 pacid=23158552 polypeptide=Lus10012921 locus=Lus10012921.g ID=Lus10012921.BGIv1.0 annot-version=v1.0 MFTRIFGKPKQESNALATLDKLNETLEMLEKKEKVLVKKAGQEVEKAREYARGGNKRAAIQSLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETV DALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVHVPAGKQPARAAPQ RKNTKEEDELAALQAEMAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	0	1
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	1.4	0.9403
AT1G36980			unknown protein		Lus10037355 [exp]	1.7	0.9158
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	2.0	0.9300
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10016082 [exp]	2.2	0.8976
AT4G08230			glycine-rich protein (.1.2)		Lus10024100 [exp]	4.2	0.8942
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10015642 [exp]	4.2	0.8974
AT1G36980			unknown protein		Lus10035779 [exp]	4.6	0.8967
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021561 [exp]	5.8	0.8757
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10038334 [exp]	6.9	0.9052
AT1G43130		LCV2	like COV 2 (.1)		Lus10018868 [exp]	6.9	0.8769

Compare expression of checked genes

Lus10012921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.