Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19810 369 / 6e-127 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT4G29190 337 / 3e-114 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G25900 255 / 7e-83 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G03790 202 / 4e-61 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G44260 200 / 2e-60 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G41900 197 / 1e-56 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G58620 190 / 8e-55 C3HZnF zinc finger (CCCH-type) family protein (.1) AT5G12850 190 / 2e-54 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G07500 172 / 1e-51 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G55980 174 / 6e-49 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035006 [exp] 659 / 0 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10033665 [exp] 202 / 4e-62 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10017708 [exp] 197 / 1e-60 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 191 / 3e-57 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10019709 [exp] 195 / 1e-55 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10028970 [exp] 183 / 5e-52 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10007493 [exp] 183 / 8e-52 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10040662 [exp] 171 / 4e-49 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G234300 [exp] 354 / 2e-120 AT4G29190 306 / 4e-102 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.018G058600 [exp] 346 / 2e-117 AT2G19810 314 / 4e-105 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Potri.017G013400 [exp] 224 / 1e-69 AT1G03790 265 / 2e-85 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G138300 [exp] 220 / 2e-68 AT1G03790 233 / 2e-73 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.016G053700 [exp] 203 / 6e-59 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 202 / 2e-58 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 198 / 2e-57 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 197 / 9e-57 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G061000 [exp] 195 / 5e-56 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G252600 [exp] 192 / 8e-55 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012922 pacid=23158549 polypeptide=Lus10012922 locus=Lus10012922.g ID=Lus10012922.BGIv1.0 annot-version=v1.0 ATGATGCTTGGCGAACAACACCGTCTCAATCATTCCGTCCACGTTCCCCCTTGGGAAGATCAGACCCCTGATTTGTTCAGCCCTGGCAATGGCGGCTCTA CTGATTACAATCCCTATTACATCCAGGAAGCTCTATCGGCGCTGCAGAGGTTCCTTCCGTCGAATGACTCCGATTTGGACCAAGAGTTCGATATTCCGGG TCTGGACCATGACTCTCCCATCGACGCTTACTCCTGCGATCACTTCAGGATGTACGAGTTCAAGGTGAGGCGGTGCGCACGTGGCAGGTCCCACGACTGG ACTGAGTGTCCGTACGCGCACCCGGGAGAAAAGGCTCGCCGGAGGGATCCAAGGAAGTTCCATTACTCCGGCACTGCTTGCCCTGAGTTCCGCAAAGGGA GTTGCAAGAAGGGCGACGGCTGCGAGTTCGCCCACGGCGTATTCGAGTGCTGGCTACACCCTGCTCGCTATCGTACGCAGCCCTGCAAGGACGGTACGAA CTGCAAGCGCAGGGTATGTTTCTTCGCCCACACGCCGGAGCAACTCAGGGTCTTGCCGCAGAGCCCTCGAAGCGTCAACTCTGCTGACTCCTACGACGGA TCTCCTCTCCGCCAGGCGATCGAGGCTTCCTGCGTCAGGAATCTTCCTTTCTTGGCTTCGTCGCACTCGCCGGGATCCATCACGCCTCCAGAGGTCGACT CGCCCCCGATGTCTCCGATGCTGAGTCGCTCCCTCGGATCCAACTCGGTCAACGAAATGGTGGCTTCTCTGCGGAACCTCCAGATTGGTAAGATGCCATC CTTGCCTTCATCTTGGAATGTGCAGGTGGGCGGAGGTTGTAGTGGCGGAGGATCAGTTTACGGATCCCCTCGGGCCGGGTCGATCCTTAGACCCGGATTC TGCAGTGTGCCCACTACTCCGACCCGAACCCCAAGCGGACTACGTTACCATGATTTCTGGGATAAAGTCTGCGAGGAGGAGGAGCCGGCGATGGAAAGGG TCGAATCCGGTAGAGATATCAGGGCGAGGATGTTCGAAAGGCTTAGCAAGGAGAACAATATGCTGGAGCGAGTCGACCCAGGTATGGGCCCAGCTTCCGG CGGTCCGGATGTCGATTGGGTTTCCGATCTAGTTCAGTGA
AA sequence Show only first row Show all	>Lus10012922 pacid=23158549 polypeptide=Lus10012922 locus=Lus10012922.g ID=Lus10012922.BGIv1.0 annot-version=v1.0 MMLGEQHRLNHSVHVPPWEDQTPDLFSPGNGGSTDYNPYYIQEALSALQRFLPSNDSDLDQEFDIPGLDHDSPIDAYSCDHFRMYEFKVRRCARGRSHDW TECPYAHPGEKARRRDPRKFHYSGTACPEFRKGSCKKGDGCEFAHGVFECWLHPARYRTQPCKDGTNCKRRVCFFAHTPEQLRVLPQSPRSVNSADSYDG SPLRQAIEASCVRNLPFLASSHSPGSITPPEVDSPPMSPMLSRSLGSNSVNEMVASLRNLQIGKMPSLPSSWNVQVGGGCSGGGSVYGSPRAGSILRPGF CSVPTTPTRTPSGLRYHDFWDKVCEEEEPAMERVESGRDIRARMFERLSKENNMLERVDPGMGPASGGPDVDWVSDLVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10012922 [exp]	0	1
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	2.0	0.7986
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10029834 [exp]	2.4	0.7858
AT2G46550			unknown protein		Lus10030237 [exp]	4.2	0.7891
AT5G22840			Protein kinase superfamily pro...		Lus10020515 [exp]	5.3	0.7786
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10032466 [exp]	7.9	0.7685
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Lus10026266 [exp]	9.5	0.7546
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015109 [exp]	10.0	0.7682
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	10.7	0.7399
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10004167 [exp]	13.8	0.7796
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Lus10038717 [exp]	16.4	0.7221

Compare expression of checked genes

Lus10012922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.