Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26260 478 / 2e-171 MIOX4 myo-inositol oxygenase 4 (.1.2) AT2G19800 469 / 1e-167 MIOX2 myo-inositol oxygenase 2 (.1) AT5G56640 462 / 5e-165 MIOX5 myo-inositol oxygenase 5 (.1) AT1G14520 447 / 3e-159 MIOX1 myo-inositol oxygenase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035005 [exp] 627 / 0 AT4G26260 477 / 7e-171 myo-inositol oxygenase 4 (.1.2) Lus10006198 [exp] 434 / 4e-154 AT2G19800 452 / 3e-161 myo-inositol oxygenase 2 (.1) Lus10041030 [exp] 434 / 3e-146 AT2G19800 448 / 1e-151 myo-inositol oxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G069700 [exp] 507 / 0 AT4G26260 465 / 2e-166 myo-inositol oxygenase 4 (.1.2) Potri.017G100200 [exp] 456 / 1e-162 AT2G19800 482 / 4e-173 myo-inositol oxygenase 2 (.1) Potri.008G144500 [exp] 455 / 2e-162 AT1G14520 514 / 0.0 myo-inositol oxygenase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [flax] [poplar] HD_PDEase PF05153 [flax] [poplar] MIOX Myo-inositol oxygenase
Representative CDS sequence Show only first row Show all	>Lus10012923 pacid=23158534 polypeptide=Lus10012923 locus=Lus10012923.g ID=Lus10012923.BGIv1.0 annot-version=v1.0 ATGACGATCCGTATCGAGCAACCCGACTCTGCTAACACCGCTACATCTCTTCTTGAGGTGGTTCATGAGAAAAATAAAAACAAAGTAGGAGGAGAAGAGA AAGAGGAGTTGGTGTTGGATGGTGGGTTTGTGGTGCCAGAGAAGCCCATTGTTTCCAGCAACGAATTCGAAGCTCCTGATGTTAACGCCTTTGGCAATTC ATTCAGGAACTACGATGCAGAAAATGAGAGGCAGAAGACTGTTGAGAATCTCTACAGACAGCAACACTGCACCCAGACATATGATTTCGTGAAGAAGATG AGGGAAGAGTATGGGAAGCTGGACAAGGGGGAAATGAGCATATGGGAGTGTTGTGAGTTGCTGAACAGTGTGGTGGATGAGAGTGATCCTGATCTGGATG AGCCTCAAATTCAGCATTTGTTGCAGTCTGCTGAAGCCATTAGGAAGGACTACCCTAATGAGGATTGGCTCCACTTGACTGCTCTTATTCACGATCTGGG GAAGATTCTGCTGCTGCCACAGTTTGGGGAGCTCCCACAATGGGCAGTGGTTGGTGACACTTACCCACTTGGTTGTGCTTTTGACCCTTCTAATGTTCAC CACAAGTATTTTGCTGAGAATCCTGATACAAAGAACCCAGCCTACAGCACCAAGAATGGAGTTTACAAGGAAGGATGTGGACTTGACAGTGTCTTAATGT CATGGGGCCATGACGACTACATGTACTTGGTGGCCAAGGAAAACAAGACCACTCTGCCTTCAGCTGCATTGTTTATCGTCAGATACCACTCTTTCTATCC TCTGCACAAGCATGGTGCATACAAGCAGCTGATGAACAAGCAGGACCAGGAAGACATCAAGTGGCTCCATGTCTTTAACAAATATGATCTATACAGCAAG AGCAAGGTCCATGTAGACGTTGATGCAGTGAAGCCATACTACCAATCCCTCATTGCAAAATACTTCCCAGAGAAACTGAGATGGTAA
AA sequence Show only first row Show all	>Lus10012923 pacid=23158534 polypeptide=Lus10012923 locus=Lus10012923.g ID=Lus10012923.BGIv1.0 annot-version=v1.0 MTIRIEQPDSANTATSLLEVVHEKNKNKVGGEEKEELVLDGGFVVPEKPIVSSNEFEAPDVNAFGNSFRNYDAENERQKTVENLYRQQHCTQTYDFVKKM REEYGKLDKGEMSIWECCELLNSVVDESDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKILLLPQFGELPQWAVVGDTYPLGCAFDPSNVH HKYFAENPDTKNPAYSTKNGVYKEGCGLDSVLMSWGHDDYMYLVAKENKTTLPSAALFIVRYHSFYPLHKHGAYKQLMNKQDQEDIKWLHVFNKYDLYSK SKVHVDVDAVKPYYQSLIAKYFPEKLRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10012923 [exp]	0	1
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	4.1	0.9710
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	4.2	0.9675
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003051 [exp]	4.5	0.9626
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10042174 [exp]	4.6	0.9669
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	8.0	0.9620
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	11.0	0.9640
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10019299 [exp]	11.0	0.9598
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	11.8	0.9625
AT2G19900		ATNADP-ME1	Arabidopsis thaliana NADP-mali...		Lus10012964 [exp]	12.0	0.9462
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10019970 [exp]	15.7	0.9529

Compare expression of checked genes

Lus10012923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.