Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19790 281 / 4e-99 SNARE-like superfamily protein (.1) AT1G47830 130 / 2e-39 SNARE-like superfamily protein (.1) AT2G17380 124 / 4e-37 AP19 associated protein 19 (.1) AT4G35410 124 / 4e-37 Clathrin adaptor complex small chain family protein (.1.2) AT3G50860 111 / 9e-32 Clathrin adaptor complex small chain family protein (.1) AT4G08520 44 / 6e-06 SNARE-like superfamily protein (.1) AT1G60970 43 / 1e-05 SNARE-like superfamily protein (.1) AT3G09800 42 / 3e-05 SNARE-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035004 [exp] 276 / 1e-97 AT2G19790 262 / 6e-92 SNARE-like superfamily protein (.1) Lus10024337 [exp] 126 / 4e-37 AT1G47830 274 / 5e-95 SNARE-like superfamily protein (.1) Lus10026316 [exp] 122 / 6e-36 AT2G17380 297 / 7e-105 associated protein 19 (.1) Lus10042352 [exp] 119 / 1e-34 AT2G17380 297 / 3e-104 associated protein 19 (.1) Lus10003641 [exp] 106 / 9e-30 AT4G35410 251 / 8e-87 Clathrin adaptor complex small chain family protein (.1.2) Lus10041742 [exp] 87 / 4e-22 AT3G50860 278 / 6e-97 Clathrin adaptor complex small chain family protein (.1) Lus10024011 [exp] 84 / 8e-21 AT3G50860 215 / 3e-72 Clathrin adaptor complex small chain family protein (.1) Lus10037624 [exp] 47 / 4e-07 AT4G08520 287 / 3e-100 SNARE-like superfamily protein (.1) Lus10006883 [exp] 47 / 4e-07 AT4G08520 287 / 3e-100 SNARE-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149100 [exp] 286 / 2e-101 AT2G19790 287 / 1e-101 SNARE-like superfamily protein (.1) Potri.005G238701 [exp] 127 / 1e-38 AT1G47830 275 / 8e-97 SNARE-like superfamily protein (.1) Potri.002G022900 [exp] 127 / 2e-38 AT1G47830 278 / 6e-98 SNARE-like superfamily protein (.1) Potri.012G052000 [exp] 124 / 3e-37 AT2G17380 307 / 6e-109 associated protein 19 (.1) Potri.014G079000 [exp] 123 / 2e-36 AT4G35410 291 / 1e-102 Clathrin adaptor complex small chain family protein (.1.2) Potri.002G001800 [exp] 119 / 7e-35 AT2G17380 278 / 3e-97 associated protein 19 (.1) Potri.007G025400 [exp] 104 / 4e-29 AT3G50860 296 / 1e-104 Clathrin adaptor complex small chain family protein (.1) Potri.005G122900 [exp] 100 / 3e-27 AT3G50860 286 / 1e-100 Clathrin adaptor complex small chain family protein (.1) Potri.003G043200 [exp] 42 / 2e-05 AT1G60970 288 / 4e-101 SNARE-like superfamily protein (.1) Potri.001G352900 [exp] 41 / 6e-05 AT1G60970 278 / 6e-97 SNARE-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain
Representative CDS sequence Show only first row Show all	>Lus10012924 pacid=23158550 polypeptide=Lus10012924 locus=Lus10012924.g ID=Lus10012924.BGIv1.0 annot-version=v1.0 ATGGGAATCCGGTTCATATTGATGGTGAACAAGCAAGGCCAGACTCGTCTTGCTCAATACTATGAATGGCTCACTCTGGAAGAGCGTCGAGCCATCGAAG GCGAAATCGTCCGCAAGTGCCTCGCCCGCAACGAACAACAGTGTTCCTTCGTTGAGCACCGGAATTACAAGATCGTCTACAGGAGATACGCATCGCTGTT TTTCTTGGTTGGAGTTGGCAATGACGAGAATGAGCTTGCAATTTTGGAATTTATACATCTGTTAGTGGAAACCATGGACCGTCATTTTGGCAATGTGTGT GAGCTAGACATCATGTTCCATTTAGAGAAAGCACATTTCATGCTGGAAGAGATGGTCATGAATGGTTGCATTGTTGAGACGAGCAAATCCAACATCCTCA GCCCCATACAGTTGATGGAGAAAATGTCCTAG
AA sequence Show only first row Show all	>Lus10012924 pacid=23158550 polypeptide=Lus10012924 locus=Lus10012924.g ID=Lus10012924.BGIv1.0 annot-version=v1.0 MGIRFILMVNKQGQTRLAQYYEWLTLEERRAIEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVGNDENELAILEFIHLLVETMDRHFGNVC ELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKMS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19790			SNARE-like superfamily protein...		Lus10012924 [exp]	0	1
AT1G51650			ATP synthase epsilon chain, mi...		Lus10035755 [exp]	1.4	0.9088
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10042387 [exp]	1.7	0.9137
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10005704 [exp]	4.0	0.9005
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	4.6	0.9055
AT5G07960			unknown protein		Lus10034695 [exp]	5.5	0.8770
AT1G11240			unknown protein		Lus10011247 [exp]	5.5	0.8986
AT2G32980			unknown protein		Lus10030015 [exp]	7.1	0.8706
AT5G07960			unknown protein		Lus10021623 [exp]	8.4	0.8728
AT1G05205			unknown protein		Lus10039669 [exp]	9.5	0.8894
AT3G05545			RING/U-box superfamily protein...		Lus10020655 [exp]	12.0	0.8890

Compare expression of checked genes

Lus10012924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.