Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29210 644 / 0 GGT4, GGT3 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2) AT4G39640 485 / 3e-167 GGT1 gamma-glutamyl transpeptidase 1 (.1.2) AT4G39650 474 / 1e-162 GGT2 gamma-glutamyl transpeptidase 2 (.1) AT1G69820 242 / 8e-78 GGT4, GGT3 gamma-glutamyl transpeptidase 4, gamma-glutamyl transpeptidase 3 (.1) AT4G29220 71 / 5e-13 PFK1 phosphofructokinase 1 (.1) AT4G32840 71 / 8e-13 PFK6 phosphofructokinase 6 (.1) AT4G26270 68 / 7e-12 PFK3 phosphofructokinase 3 (.1) AT5G56630 66 / 2e-11 PFK7 phosphofructokinase 7 (.1) AT5G61580 62 / 7e-10 PFK4 phosphofructokinase 4 (.1.2) AT2G22480 45 / 8e-05 PFK5 phosphofructokinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035003 [exp] 944 / 0 AT4G29210 754 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2) Lus10035001 [exp] 84 / 7e-17 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 80 / 1e-15 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 80 / 2e-15 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10006032 [exp] 65 / 8e-11 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10005488 [exp] 64 / 1e-10 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10008812 [exp] 46 / 6e-05 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G069450 [exp] 723 / 0 AT4G29210 789 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2) Potri.005G082800 [exp] 511 / 5e-177 AT4G39640 786 / 0.0 gamma-glutamyl transpeptidase 1 (.1.2) Potri.001G333400 [exp] 494 / 1e-170 AT4G39640 768 / 0.0 gamma-glutamyl transpeptidase 1 (.1.2) Potri.018G069200 [exp] 76 / 1e-14 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.006G152600 [exp] 72 / 3e-13 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.006G235066 [exp] 62 / 9e-11 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 60 / 2e-09 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.001G079501 [exp] 49 / 1e-06 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2) Potri.016G002700 [exp] 44 / 0.0002 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.007G010300 [exp] 42 / 0.0007 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF01019 [flax] [poplar] G_glu_transpept Gamma-glutamyltranspeptidase
Representative CDS sequence Show only first row Show all	>Lus10012925 pacid=23158579 polypeptide=Lus10012925 locus=Lus10012925.g ID=Lus10012925.BGIv1.0 annot-version=v1.0 ATGGTTATTGTCATAGCTGAAGGTGCTGGACAAGAGCTTCTTTCAGAGAGTAAACTAATGACTGATGCTTCCGGAAATAAGCTTCTCCAGGACGTGGGGT TGTGGTTATCACAAAGTATCAAGAATATGTATGCAAATGACATAGAAGCCAAGTACTTGGGTCCGCTGTCAATGGGGGTTCCTGGCGAGATTGCTGGGCT TTACGAAGCTTGGTTGCAGTATGGTCGTCTACCATGGAATACCTTACTCCAACCTGCGATTAAACTTGCCAAGGATGGCTTTGTGGTTGCACCTTACCTG GCCAAATTCATAGTGGAGACCACAAAAATCCTTAACGACCCTGGATTGCAAATGGTGTATGCACCCAATGGGAAGCTGTTGAAAGCTGGTGACGTATGCT ACAATATAGCACTAGCTCGCACATTGGAAGCCATTGCGGAGCACGGGCCAGAGGTTTTCTACAATGGCAGTGTTGGTGAGAATCTGGTGAAGGATGTTAG AGCAGCTGGAGGGATAATCAAAATGGAAGATTTGAACAACTACAAGGTCCGAGTCACTGATGCAGTGGCTGTAGATGCAATGGGTTACACCATTTACGGA ATGCCTTCTCCTTCCAGTGGAACTCTTGGAATGTCTCTGGTGATGAACATCTTCAAAAGCTACGAAAGTCCTAATCCTGCAAATGGTGGCATTGGTCTGC ATCGCTTGATCGAATCACTGAAGCACATGTTTGCCCTCAGGATGAACTTGGGAGATCCTGACTTTGTTGATATCAGCAAAGTTCAAGCTCAGATGCTCTC TCCGGTTTTTGCTGAGAAGATTCAGAAACTGATATTTGATAACACTACTTTCCCTCCAGAATATTACATGAACAAGTGGAGTCAGTTAAGAGACCATGGA ACCAGCCATTTCTGCATTGTTGACGCGGAACGAAATGCTGTATCAATGACGTCAACTGTGAACTATGGCTTCGGAGCTGGCTTGCTGTCTCCTTCAACTG GGATTGTGATCAACAATGAGATGGGTGATTTCTCAGCTCCAACGGAGATATCCTCTGATCATCTCCCTCCATCCCCTGCCAATTTCATTGAACCAAATAA ACGACCCTTATCTTCCATGGCCCCAATCATCATTACAAAGGGAAATCAACTGGCGGGAGTCCTCGGAGGGAGTGGTGGCTTGTACATTATTCCGGCAATA GTAGAAGTTTTCCTTAACCACTTTGTGTTTGGGATGGAACCTTTGCATGCAGTCCTTAGCCCAAGGGTTTACCATGATTTGATACCAAATGTTGTCAAGT ACGAGAACTGGACATTAATATGCGGGGATCACATAGAGCTTGCAGATGAAAGAAAGGCTTTTTTGAAACAACGGGGTCACCAGTTAAGTGCCAATTCAGG AGGAGCTATAGTTCAGCTAGTTGTTCAATCTCTACAGAGACCAATCGCTCCTGGCCGAAAGACGAAAGGAGGCAGCAACATGGAAGTCCATGGAATGCTA ACTGCAGTAAGTGATCTACGCAAGGATGGCAGGCCAGCAGGTGTCTGA
AA sequence Show only first row Show all	>Lus10012925 pacid=23158579 polypeptide=Lus10012925 locus=Lus10012925.g ID=Lus10012925.BGIv1.0 annot-version=v1.0 MVIVIAEGAGQELLSESKLMTDASGNKLLQDVGLWLSQSIKNMYANDIEAKYLGPLSMGVPGEIAGLYEAWLQYGRLPWNTLLQPAIKLAKDGFVVAPYL AKFIVETTKILNDPGLQMVYAPNGKLLKAGDVCYNIALARTLEAIAEHGPEVFYNGSVGENLVKDVRAAGGIIKMEDLNNYKVRVTDAVAVDAMGYTIYG MPSPSSGTLGMSLVMNIFKSYESPNPANGGIGLHRLIESLKHMFALRMNLGDPDFVDISKVQAQMLSPVFAEKIQKLIFDNTTFPPEYYMNKWSQLRDHG TSHFCIVDAERNAVSMTSTVNYGFGAGLLSPSTGIVINNEMGDFSAPTEISSDHLPPSPANFIEPNKRPLSSMAPIIITKGNQLAGVLGGSGGLYIIPAI VEVFLNHFVFGMEPLHAVLSPRVYHDLIPNVVKYENWTLICGDHIELADERKAFLKQRGHQLSANSGGAIVQLVVQSLQRPIAPGRKTKGGSNMEVHGML TAVSDLRKDGRPAGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Lus10012925 [exp]	0	1
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10037296 [exp]	12.7	0.7251
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	12.8	0.7756
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10020979 [exp]	13.3	0.7197
AT3G27210			unknown protein		Lus10035217 [exp]	16.0	0.7683
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Lus10034611 [exp]	27.9	0.6801
AT1G71190		TTN4, SAG18	senescence associated gene 18 ...		Lus10001354 [exp]	34.9	0.7165
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10042303 [exp]	51.2	0.7126
					Lus10017966 [exp]	63.3	0.7098
AT5G47060			Protein of unknown function (D...		Lus10019494 [exp]	66.9	0.7084
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	69.3	0.6939

Compare expression of checked genes

Lus10012925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.