Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35680 293 / 8e-99 Phosphotyrosine protein phosphatases superfamily protein (.1) AT5G56610 289 / 1e-98 Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT3G23610 54 / 2e-08 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT2G04550 49 / 1e-06 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) AT3G06110 47 / 2e-06 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034998 [exp] 387 / 6e-137 AT5G56610 247 / 1e-82 Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10004376 [exp] 293 / 5e-99 AT2G35680 367 / 3e-127 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10040174 [exp] 291 / 8e-98 AT2G35680 369 / 5e-128 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10021940 [exp] 57 / 1e-09 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 46 / 4e-06 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10000921 [exp] 47 / 1e-05 AT2G04550 322 / 1e-111 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Lus10002263 [exp] 46 / 1e-05 AT2G04550 327 / 1e-113 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Lus10033625 [exp] 42 / 0.0006 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G045500 [exp] 315 / 2e-107 AT2G35680 360 / 2e-124 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.002G136700 [exp] 310 / 1e-105 AT2G35680 350 / 1e-120 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.001G154700 [exp] 307 / 3e-104 AT2G35680 379 / 1e-131 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.003G080000 [exp] 304 / 4e-103 AT2G35680 385 / 3e-134 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.010G238700 [exp] 51 / 3e-07 ND / Potri.008G020500 [exp] 50 / 7e-07 ND / Potri.010G033000 [exp] 47 / 3e-06 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.012G105800 [exp] 43 / 0.0002 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.014G160500 [exp] 42 / 0.0003 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Potri.007G047900 [exp] 42 / 0.0005 AT3G19420 702 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10012928 pacid=23158533 polypeptide=Lus10012928 locus=Lus10012928.g ID=Lus10012928.BGIv1.0 annot-version=v1.0 ATGAAGATTGAGGAGTTGGACGATCTGGAGTGCGATCTTCAGAGTAGAGAAGATGACAGAATCTGCGAGAAGCAGAAGCAGAAGCAGCTGCAGATGGTTA GGGTTGACGCCAAGAGAGCGCTAGTTGGAGTGGGAGCTCGGGTTCTTTTCTACCCCACGCTTTTCTATAACGTGTTTAGGAACAAAATTCAAACCGAGTT CCGATGGTGGGATGAAGTTGACCAGTATCTATTACTTGGTGCTGTCCCGTTTCCGAAGGATGTTCCCCGGTTAAAGAAGCTTGGTGTTGGTGGAGTCATC ACGCTCAATGAACCATACGAGACCTTGGTCCCATCATCCTTGTATCATGTCCATGGGATTGACCATCTTGTAATTCCCACTAGGGATTATTTATTTGCCC CATCATTTGCAGATATTGGTCAGGCAGTGGACTTCATCCATCGGAATGCATTGTGTTGTAGAACTACCTATGTTCACTGTAAAGCTGGACGTGGACGGAG CACTACCATTGTGCTTTGTTATTTGGTAAAATATAAGCAGATGACACCAGCTGCCGCCCTTGATTATGTGAGGTCTAGAAGACCTCGAGTGTTGCTAGCT CCATCCCAGTGGGAGGCTGTTCAAGAATTCAGTAGACGCCAGATCACCACCACCACACTGTCTCCCTCAGGGGATGAAGTTCTCATTACCAAAGCTGATC TTGAAGGCTACCATAGCCCCTCTGAGAATAGTGCTACTGGTAAGGAAATGGCAATCATACCGAGAACGAAGTCAAGGCCGATGATAGCCAGGTTGTCTTG TCTGTTCGCATCCTTGAAGGTCTCTGGCGTCTCCGGACCAGTTAGTGGGCGAATGCCTGAGGCACGTGCATGCTAA
AA sequence Show only first row Show all	>Lus10012928 pacid=23158533 polypeptide=Lus10012928 locus=Lus10012928.g ID=Lus10012928.BGIv1.0 annot-version=v1.0 MKIEELDDLECDLQSREDDRICEKQKQKQLQMVRVDAKRALVGVGARVLFYPTLFYNVFRNKIQTEFRWWDEVDQYLLLGAVPFPKDVPRLKKLGVGGVI TLNEPYETLVPSSLYHVHGIDHLVIPTRDYLFAPSFADIGQAVDFIHRNALCCRTTYVHCKAGRGRSTTIVLCYLVKYKQMTPAAALDYVRSRRPRVLLA PSQWEAVQEFSRRQITTTTLSPSGDEVLITKADLEGYHSPSENSATGKEMAIIPRTKSRPMIARLSCLFASLKVSGVSGPVSGRMPEARAC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	0	1
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Lus10000829 [exp]	2.0	0.8503
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10021176 [exp]	2.0	0.8366
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	3.2	0.8601
AT4G19670			RING/U-box superfamily protein...		Lus10036202 [exp]	4.9	0.8384
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10026626 [exp]	5.5	0.8156
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10043482 [exp]	6.6	0.7866
AT5G46240		KAT1	potassium channel in Arabidops...		Lus10042831 [exp]	9.1	0.7627
AT2G01690			ARM repeat superfamily protein...		Lus10001587 [exp]	9.8	0.8173
AT5G42000			ORMDL family protein (.1.2)		Lus10017314 [exp]	10.6	0.7793
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10011968 [exp]	11.2	0.8292

Compare expression of checked genes

Lus10012928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.