Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29240 424 / 4e-147 Leucine-rich repeat (LRR) family protein (.1) AT2G19780 409 / 2e-141 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 270 / 1e-85 Leucine-rich repeat (LRR) family protein (.1) AT4G28380 262 / 4e-84 Leucine-rich repeat (LRR) family protein (.1) AT3G22800 262 / 7e-83 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 265 / 3e-81 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT2G15880 256 / 3e-78 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 255 / 4e-77 LRX2 leucine-rich repeat/extensin 2 (.1) AT4G33970 251 / 1e-76 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 253 / 3e-76 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017727 [exp] 266 / 6e-82 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 258 / 1e-81 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 254 / 1e-80 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 251 / 1e-77 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10039362 [exp] 243 / 1e-76 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 239 / 1e-74 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 244 / 2e-74 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 238 / 5e-74 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 241 / 1e-72 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152800 [exp] 483 / 1e-170 AT4G29240 472 / 3e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 266 / 1e-85 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 261 / 3e-83 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 265 / 6e-83 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 266 / 2e-82 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 264 / 2e-82 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 267 / 3e-81 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G151000 [exp] 259 / 4e-81 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G245600 [exp] 259 / 8e-81 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 254 / 1e-80 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012929 pacid=23158564 polypeptide=Lus10012929 locus=Lus10012929.g ID=Lus10012929.BGIv1.0 annot-version=v1.0 ATGATTCTCACCCACACCCAGAAGAACCTCTTCCTCTTCGCTCTGTCCTTCCTCCTCCTCCTCTTACACCATACATCAGCCTTCACACTCGCCGGGAGTG TCGGAGTAGGCAATGTAGGTCTTACTGCCAGCGGCGGTGTATGGATCGGCGGCGGAGTCACCACCCAAAACCCCGTCTCACCACCACCGCCACCACTCTC CTCTGCTTACTCTGCTCTCCAAGCTTGGAAATCCGCAATCTCCGCCGATCCTTCCGCAATCCTCGACACCTGGGTCGGCCCAAACATCTGTTCCTACAAA GGAATTTTCTGCAAAACCACAACCGGCGTCGGCGGCGGCGGTCCAGTCGTCGTCGGAATAGATCTCAATCGAGCGAATCTTCAAGGAATCCTCGTCAACG AGCTCTCCCTCTTAACCGATTTAACCCTGATCCACCTCAACTCCAACAGATTCCACGGCGTCGTACCAGAGGCATTCCAAAACCTTGTCTCCCTCCAGGA ATTAGACCTCAGCAACAACCAATTCTCGGGAAATTTCCCCATTCCGGTACTCTACATCCCGAATCTCCTCTACCTCGACCTCCGATTCAACTCCTTCACC GGCCAAATCCCCGACGAACTCTTCGACAAACGGCTCGACGCCATTTTCCTCAACAACAACCAATTCGAAGGCTCAATCCCTCAGAATCTCGGCAACTCGC CGGCTTCCGTCATCAATTTGGGCTACAACAAGCTGACAGGGAGCATCCCGTTCAGCCTAGGGTTTATGAATTCGAGGCTGAAGGAGATTCTGTTCCTCAA TAATCAACTCACGGGTTGCATCCCGGAAGGGATCGGGTTGTTTGCCCAGATGCAAGTTCTGGATGTGAGCTTCAATTCGCTGATGGGGCATTTGCCGGAC ACGGTGGCTTGTTTGAGCGCGATTGAGGTTCTGAATTTGGAGCACAATGCGCTTTCCGGTACGCTCCCTGAGCTGGTGTGCTCGTTGAGGAGTTTGGTGA ATTTGACGGTGGCGTATAATTTCTTTTCGGGGTTTAGCCAGGAATGTGCCAAGTTGTTTGTGAGGAATGTTGGGTTTGATTTCGAGTCGAATTGTATTCC TGGGAGGGACATGCAGCGGCCGCAGCCGGACTGCTCGATGGTCCCCGGCGGCGGGTTGAGTTGTTTGAGGATCCCGGCGGCTCAGCCGCTTGTTTGTGGG TCGATCGTGGGTAGATTAGAGGATTCCGAGGGTCAGCCATCTTCTTCTTCTTCTCCCTGA
AA sequence Show only first row Show all	>Lus10012929 pacid=23158564 polypeptide=Lus10012929 locus=Lus10012929.g ID=Lus10012929.BGIv1.0 annot-version=v1.0 MILTHTQKNLFLFALSFLLLLLHHTSAFTLAGSVGVGNVGLTASGGVWIGGGVTTQNPVSPPPPPLSSAYSALQAWKSAISADPSAILDTWVGPNICSYK GIFCKTTTGVGGGGPVVVGIDLNRANLQGILVNELSLLTDLTLIHLNSNRFHGVVPEAFQNLVSLQELDLSNNQFSGNFPIPVLYIPNLLYLDLRFNSFT GQIPDELFDKRLDAIFLNNNQFEGSIPQNLGNSPASVINLGYNKLTGSIPFSLGFMNSRLKEILFLNNQLTGCIPEGIGLFAQMQVLDVSFNSLMGHLPD TVACLSAIEVLNLEHNALSGTLPELVCSLRSLVNLTVAYNFFSGFSQECAKLFVRNVGFDFESNCIPGRDMQRPQPDCSMVPGGGLSCLRIPAAQPLVCG SIVGRLEDSEGQPSSSSSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29240			Leucine-rich repeat (LRR) fami...		Lus10012929 [exp]	0	1
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	2.2	0.8657
AT2G41905			unknown protein		Lus10026313 [exp]	5.5	0.8210
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009565 [exp]	7.9	0.8398
AT2G45590			Protein kinase superfamily pro...		Lus10036533 [exp]	8.0	0.8023
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041870 [exp]	12.8	0.8238
AT5G42350			Galactose oxidase/kelch repeat...		Lus10013215 [exp]	14.2	0.8326
AT2G20820			unknown protein		Lus10033715 [exp]	15.2	0.8243
AT1G53210			sodium/calcium exchanger famil...		Lus10042848 [exp]	15.4	0.7626
AT4G37660			Ribosomal protein L12/ ATP-dep...		Lus10000093 [exp]	16.7	0.8035
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	21.2	0.8178

Compare expression of checked genes

Lus10012929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.