Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33590 350 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G33600 341 / 6e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G76470 281 / 2e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 234 / 5e-76 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G15950 222 / 6e-71 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G09510 221 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 218 / 8e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G80820 216 / 9e-69 CCR2, ATCCR2 cinnamoyl coa reductase (.1) AT4G35420 210 / 2e-66 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G19440 209 / 7e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024138 [exp] 364 / 5e-127 AT2G33590 420 / 2e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 256 / 6e-84 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 254 / 2e-81 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10030973 [exp] 238 / 3e-77 AT1G15950 457 / 1e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10035369 [exp] 230 / 8e-74 AT1G15950 456 / 6e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10026385 [exp] 229 / 1e-73 AT5G58490 533 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 213 / 2e-67 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042399 [exp] 211 / 1e-66 AT2G02400 457 / 7e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026273 [exp] 207 / 4e-65 AT2G02400 461 / 2e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G257700 [exp] 385 / 4e-134 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G004100 [exp] 378 / 1e-132 AT2G33590 438 / 1e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G004500 [exp] 316 / 5e-108 AT2G33590 364 / 2e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 246 / 1e-80 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 242 / 1e-78 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 241 / 3e-78 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045100 [exp] 240 / 7e-78 AT1G15950 483 / 9e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 239 / 1e-77 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.003G181400 [exp] 237 / 8e-77 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.009G076300 [exp] 231 / 1e-74 AT5G58490 511 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10012930 pacid=23158570 polypeptide=Lus10012930 locus=Lus10012930.g ID=Lus10012930.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGAAGGGCTTAGTTTGTGTGACCGGCGCCGGAGGTTTCTTAGGTTCTTGGGTCGTCCGTATCCTCCTCTCCAACGACTATTCAGTCCACG GCACTGTCAGAGACCCCTCGGATGAGAAGTATGCCCACCTGAAGCAACTCCCCAAGGCATCCACAAACCTAAAGCTCGTAAAGGCCGATTTACTAGATTA CCCTACCCTTGTTTCTGCATTTCAAGGCTGCTCCGGGGTTTTTCACGTCGCCAGCCCTGTTCCTGCTTTCTCTGTATCAAACCCCCAGGTTGAAGTGCTG GAGCCAGCGGTGACTGGCACTCGAAATGTACTTAAAGCATGTGTTGAAACGAAGGTCAATCGAGCTGTTGTTGTGTCCTCTGGCGCTGCTGTTGCCTTGA ACCCAAGCTGGCCAAAGGATCAGCCCATGGACGAGTCTTGCTGGTCTGATAAGGAATACTGCAGAACTACGGAGAACTGGTATTGCGCCTCCAAGACGGA AGCTGAGATTCTGGCTTTTGAGTATGGCAAAGAGTATGGACTTGATGTAGTAAGTGTTTGTCCCAATTTGATATTGGGGCCTATCCTGCAGCCTACTGTG AATGCAAGTACCATGGTCCTCACCAGGCTTCTGAAAGAAGGCCTGGACTCGGTAGAGAACAAGCATAGGATGATTGTGGACGTGCGAGACGTAGCTGAAG CGTTGGTTTTGGTGTACGAGAAGCCTGAGGCACAAGGGAGATACATATGCTCTAAACATTCGGTCTATGCTCAGCAAATGGTTGAGATTTTGAAAGAAAA ATATCCCAACTACAATTTCCCTAAGAGGCAAGTCATTGATGCTCCCAGTGTGATTAGGAAATAA
AA sequence Show only first row Show all	>Lus10012930 pacid=23158570 polypeptide=Lus10012930 locus=Lus10012930.g ID=Lus10012930.BGIv1.0 annot-version=v1.0 MAAAKGLVCVTGAGGFLGSWVVRILLSNDYSVHGTVRDPSDEKYAHLKQLPKASTNLKLVKADLLDYPTLVSAFQGCSGVFHVASPVPAFSVSNPQVEVL EPAVTGTRNVLKACVETKVNRAVVVSSGAAVALNPSWPKDQPMDESCWSDKEYCRTTENWYCASKTEAEILAFEYGKEYGLDVVSVCPNLILGPILQPTV NASTMVLTRLLKEGLDSVENKHRMIVDVRDVAEALVLVYEKPEAQGRYICSKHSVYAQQMVEILKEKYPNYNFPKRQVIDAPSVIRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10012930 [exp]	0	1
AT5G45840			Leucine-rich repeat protein ki...		Lus10017439 [exp]	1.4	0.8293
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10012832 [exp]	1.7	0.8328
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	6.2	0.7855
AT2G15220			Plant basic secretory protein ...		Lus10014106 [exp]	6.3	0.7501
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10003178 [exp]	22.8	0.7419
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	22.8	0.7475
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10030481 [exp]	24.7	0.7483
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10010660 [exp]	25.5	0.7617
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10018408 [exp]	25.5	0.7284
AT1G14560			Mitochondrial substrate carrie...		Lus10013527 [exp]	32.2	0.6629

Compare expression of checked genes

Lus10012930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.