Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55320 1007 / 0 AAE18 acyl-activating enzyme 18 (.1.2) AT5G23050 685 / 0 AAE17 acyl-activating enzyme 17 (.1) AT3G13550 214 / 1e-63 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) AT2G16740 142 / 6e-39 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT1G64230 137 / 6e-37 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT4G27960 135 / 2e-36 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G41700 135 / 2e-36 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT3G08690 135 / 2e-36 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G53300 135 / 3e-36 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G56150 134 / 3e-36 UBC30 ubiquitin-conjugating enzyme 30 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034997 [exp] 1442 / 0 AT1G55320 1003 / 0.0 acyl-activating enzyme 18 (.1.2) Lus10038966 [exp] 705 / 0 AT5G23050 1043 / 0.0 acyl-activating enzyme 17 (.1) Lus10027257 [exp] 700 / 0 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10028700 [exp] 138 / 2e-37 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009422 [exp] 138 / 2e-37 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10021385 [exp] 137 / 6e-37 AT1G64230 302 / 1e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027846 [exp] 136 / 1e-36 AT1G64230 289 / 3e-102 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014187 [exp] 135 / 2e-36 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 135 / 2e-36 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006700 [exp] 1146 / 0 AT1G55320 1078 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.001G006600 [exp] 1061 / 0 AT1G55320 1041 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.015G056000 [exp] 732 / 0 AT5G23050 1054 / 0.0 acyl-activating enzyme 17 (.1) Potri.001G089300 [exp] 205 / 1e-60 AT3G13550 256 / 3e-88 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) Potri.019G083800 [exp] 137 / 3e-37 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.004G175000 [exp] 137 / 6e-37 AT5G53300 292 / 2e-103 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.011G168200 [exp] 135 / 2e-36 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.016G138900 [exp] 135 / 2e-36 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 135 / 2e-36 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.001G471200 [exp] 134 / 4e-36 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10012931 pacid=23158525 polypeptide=Lus10012931 locus=Lus10012931.g ID=Lus10012931.BGIv1.0 annot-version=v1.0 ATGTCTAGGATGTCAGGCCGTGATGTCCCGATGCCGGGGGGCGGCGGGCCATCATCATCGGCGGCCAACAATTCTTGGGTGTCGCCAACTTCAGTCTCGA CGTCAGGGAAGAGGATACAGAGAGAAATAACAGAATTCAACATGGATCCACCGCCTGATTGTTCTGCAGGTCCAAAGGGTGACAATCTCTACCATTGGAT CTCCACAATTATTGGACCTTCAGGAAAGCCATATGAAGGAGGTATATTTTTCCTTGACATAATATTTCCGAGTGACTATCCATTCAAACCGCCAAAGATG GTGTTCAAGACTCGGATTTACCATTGTAATGTTGATTCTGCTGGCAACCTAATTATAGACATGTTGAAAGATAGCTGGAGTCCGGCTCTTACAATCACTA AAGTGTTACTTGCAACAATTCTGAAATCCCTGGGATTGCACGCTTGTATTTGGCAGATAGACCCAAACATGACGAGTTGGCTTCAGAGTGGACTCGGAGG TTTGCGAATCCCGAACAAAGCCAAAGCCGTTGCAATCAAATTCAAACACAATCTGAGTAAACGGAATTCAGAATCACTAGGGGAAGTGGAGATGATAAAG AATGGGATATCTGAAATAGGGTTCCAGGACATAATCAGTGCAGGTCTTTCCCTCGAGGAGGCGACAAGACTCCACAGCAAGCTCAAAGATGCCATCTTTT TATCAAATGGGCTTAGCTCTAAACCTACAGACTCGAGAGAGTTATGGCTGAGGGTGGTGGTCGGAAAAGTGCTCCAGCCATGGCATCCCCACAAGCTTCA TCAGCTCGTTTACTATTCATGTTATGCTAATTGGGATTCCTCAACTCTTGGACCTCCTCCTTATTGGTTTCCTTCTCTGGATGAGTCAAAGTGCGCAAAC TTGGGACGTAACTTATGGATCCAGGCTTTTTGGGACTTCTTACAAGGACCCCATTACAAGTTTTGGTCTCTTCAAAAATTTAGTGTTAAATGCCCTGAGG TAGAAGCCTCGTATGTTCAGAAATCTGCTAGGTTGGTTGGCAATGCTCTAGATGCAACATTTCTGAAAGGGGAGACCATTGCCATTGACATGCCCATGAC AGTTTATTCTGTTATCATCTACTTGGCCATTATATTAGCTGGATATGTTGTAGTATCAATAGCTGACAGCTTTGCCACGAAAGAAATTGCATCTCGTTTG CGCATCTCCAATGCAAAGGGTATCTTCACTCAGGACTTCATAATTAGAGGAGGTCGGAAATTTCCGTTGTACAGCTGCGAAAGCAGGATCTTTCATGGAA CGACTTTCTTTCCGGTGCCAACCAACTGGAAAGGTAATATATTACTTATTGCTCAACCAGCCGATTCAATGGCGAACATTCTCTTTTCGTCTGGGACTAG AGGTGAAGAAATTGGAGACCCTAAAGCTCTCGTATGGATGCATCTATCACCAATTCGAGCCAGTAGCGGTGCTTCGGCTCACATTGATCTTGGGGTTCGT GATGTCTACTGTTGGCCTACAAATTTAGGTTGGGTCATGGGACCCATTTTGCTCTATTCTTGCTTTTTAACTGGTGCAACTCTTGCGCTCTTTCATGGAA CTCCTCTTGGCAGCGAGTGTGGGAAATTTGTTCAGCTAAAAGTTAGCGTCTTAGGAACTGTTCCAAGCTTAGTGAAGACTTGGAAGAATTCCAACTGCAT GGATGGATTAAACTGGACAAAGATAAGAACTTGCATCATCCTACATCCAAGGCAGCCTGCTACAACCACAAGCTTTTGGATCATTTACACTGCATCGATG ACCACAGGTTTAGTTATCATTGATGAAGAAGGGACTCCATATCCAGAAGACGAACCTTGTGTAGGTGAAGTGGGATTGTTTCCTTTGTACCTAGGTGCAT CGGATCGACTTCTGAATGCTGATCACCATCAAGTTTACTTTGAGGGAATGCCAATTGTCAAGGGAATGCAACTAAGGAGGCATGCAGACATCCTGAAGAG GACAGTTGGAGGCTACTTCATCATGCAGGGAAGGGCAGATGACACCATGAATCTCGGAGGGATTAAAACTAGTTCAGTAGAGATAGAGCGGGTATGTGAT CGAGCTGACGAAAGCATTGTGGAGACAGCGGCAGTGAGTGTGGCACCAGTGGGTGGTGGTCCAGAAGTGTTGGTGATATTTGTGGTATTGAAGAAAGGGT ATAAAGTGGAAGCAGAGCAGTTGAGAGTAATGTTCTCAAAGGCAATCCAGATCAATCTCAACCCACTATTCAAGGCAGAGTTGGAGTCATCCTTGGATTT GCATCTTGCTAAATTGTTGGAGTGTCTTGCCTTGTTTGCAAGTAAGACACACATAGGATCAGATGCTAATAACCAAAGAAGAAAATCACTCATCTTAGCG CAACCCCAAGAAGTTGCGTTAGGGAGAGACAACCAATTCCAGGGGAAAATGGAGATGATGAGAAATGGGATATCTGAAATAGAGGTCCAGGACATAATCA GTGCAGGTCTTTCCCTTGAGGAGGCGACGAGGCTCCACGACAAGCTCAAAGATGCCATCTTTTCAACAAATGGGTTCAGTAGCTCTGAACCTGCGGACTC GAGAGATTTATGGCAGAGGGTGGTGGTCGGAAAAGTGCTCCAGCCATGGCATCCCCATAAGCTCCACCAGCTGGTTTACTATTCTTGTTATGATAATTGG GATTCCTCAGCTCGTGGACCTCCTCCTTATTGGTTTCCTTCTCTAGATGAGTCAATGCGTTCAAACTTGGGACTTGCAATGGAAACTTATGGATCCAAGT TTTTTGGGACTTCTTACAAGGACCCCATTACAAGTTTTGGGCTCTTTCAAAAATTTAGTGTTAAATACCCTGAGGTTTACTGGTCCATCGTGCTACAACA GCTTTCAGTGGCTTTCCATGAAAAGCCAAAATGCATTCTTGACCCTAGTGACGAGTCGAAACCTGGTGGAGCTTGGCTACCTGGTGCGGTCATGAATATT GCTAATTGTTGTTTGCAGCCAGCAAGTCATCCTATGAAAAATGACAGCAGTATCGCAATTGTATGGAGGGATGAAACTGATTCCTCTAACATTAACCAAA TGACATTGAAAGAACTCCGACAACAAGTAATGTTGGTTGCAAATGCTCTAGATGCAACATTTGTTAAAGGGGACACCATTGCCATTGACATGCCGATGAC AGTTCATTCTGTTATCATCTACTTGGCCATTGTATTGGCTGGATATGTTGTAGTATCAATAGCTGACAGCTTTGCTGCTAAAGAAATTGCATCTCGTTTG CGCATCTCCAATGCAAAGGGTATCTTCACTCAGGACTTCATAGTTAGAGGAGGTCGGAAGTTTCCATTGTACAGTCGTGTTACCGAAGCAAAGCCACATA AAGCTATTGTGTTGCCTGCCGTTGGAAATGGTGTTGGAATTCAGTTGCGAAAGCAGGATCTTTCGTGGGACGACTTTCTTTCGAGTGCCAACCATCTGGA AAGACCAAATGTTTACTCTCCTGTTTATCAACCAGCTGATTCAATGACAAACATTCTGTTTTCGTCCGGAACTACAGGAGACCCTAAAGCTATCGTATGG ACGCATCTTTCACCAATTCGATGCAGTAGTGATGCTTGGGCTAACATTGATCTTCGGGTTGGCGATGTCTACTGTTGGCCTACAAATTTAGGTTGGGTAA TGGGACCCATTTTGCTCTATTCTTGCTTCTTAACTGGTGCAGCTCTTGCTCTCTTTCATGGATCTCCCCTTGGCCGCGAGTTTGGAAAATTTGTTCAGGA TGCCGGTGTTAGCGTATTAGGAACTGTTCCAAGCTTAGTGAAGACTTGGAAGAATTCCAACTGCATGGATAGATTAAACTGGACAAAGATAAGGTGCTTT TGTTCCACTGGGGAAACTTCAAACGTTGATGATGACCTTTGGCTCTCTTCGAAATCATATTACAAACCCATTATTGAGTGTTGTGGAGGAACGGAACTTG CATCATCCTACATCCAAGGCAGCCTGCTACAGCCACAGGCTTTTGGCTCATTTAGCACTGTGGCGATGACCACAGGTTTAGTCATCCTTGATGAAGAAGG GATTCCATATCCAGATGATGAACCTTGTGTAGGTGAAGTGGGATTGTTTCCTTTGTACCTAGGTGCATCGGATCGACTTCTGAATGCTGATCACCATCAA GTTTACTTCGAGGGAATGCCCATTGTCAATGGAATGCAACTAAGGAGACATGGTGACATTCTGAAGAGGACCGTTGGAGGATACTTCATTGTGCAGGGCC GGGCAGATGACACCATGAATCTCGGAGGGATTAAGACTAGTTCAGTGGAGATAGAGCGTGTATGTGATCGAGCTGACGAAAGCATTGTGGAGACTGCAGC AGTGAGTGTGGCACCAGTGGGTGGGGGCCCAGAAGTGTTGGTGATATTTGTGGTAGTGAAGAAAGAGTATAAAGGGGAAGCAGAGCAGTTGAGAGCCAAG TTCTCAAAGGCAATCCAGATCAATCTCAACCCACTGTTCAAAGTTGGGCATGTTAAGATTGTAGAAGAGTTTCCCAGAACGGCCTCCAATAAGGTGCTAA GGCGAGTTCTGAGGGACCAAATGAAGCAGCAGCTTCATGGACCAAGCAAGATATAG
AA sequence Show only first row Show all	>Lus10012931 pacid=23158525 polypeptide=Lus10012931 locus=Lus10012931.g ID=Lus10012931.BGIv1.0 annot-version=v1.0 MSRMSGRDVPMPGGGGPSSSAANNSWVSPTSVSTSGKRIQREITEFNMDPPPDCSAGPKGDNLYHWISTIIGPSGKPYEGGIFFLDIIFPSDYPFKPPKM VFKTRIYHCNVDSAGNLIIDMLKDSWSPALTITKVLLATILKSLGLHACIWQIDPNMTSWLQSGLGGLRIPNKAKAVAIKFKHNLSKRNSESLGEVEMIK NGISEIGFQDIISAGLSLEEATRLHSKLKDAIFLSNGLSSKPTDSRELWLRVVVGKVLQPWHPHKLHQLVYYSCYANWDSSTLGPPPYWFPSLDESKCAN LGRNLWIQAFWDFLQGPHYKFWSLQKFSVKCPEVEASYVQKSARLVGNALDATFLKGETIAIDMPMTVYSVIIYLAIILAGYVVVSIADSFATKEIASRL RISNAKGIFTQDFIIRGGRKFPLYSCESRIFHGTTFFPVPTNWKGNILLIAQPADSMANILFSSGTRGEEIGDPKALVWMHLSPIRASSGASAHIDLGVR DVYCWPTNLGWVMGPILLYSCFLTGATLALFHGTPLGSECGKFVQLKVSVLGTVPSLVKTWKNSNCMDGLNWTKIRTCIILHPRQPATTTSFWIIYTASM TTGLVIIDEEGTPYPEDEPCVGEVGLFPLYLGASDRLLNADHHQVYFEGMPIVKGMQLRRHADILKRTVGGYFIMQGRADDTMNLGGIKTSSVEIERVCD RADESIVETAAVSVAPVGGGPEVLVIFVVLKKGYKVEAEQLRVMFSKAIQINLNPLFKAELESSLDLHLAKLLECLALFASKTHIGSDANNQRRKSLILA QPQEVALGRDNQFQGKMEMMRNGISEIEVQDIISAGLSLEEATRLHDKLKDAIFSTNGFSSSEPADSRDLWQRVVVGKVLQPWHPHKLHQLVYYSCYDNW DSSARGPPPYWFPSLDESMRSNLGLAMETYGSKFFGTSYKDPITSFGLFQKFSVKYPEVYWSIVLQQLSVAFHEKPKCILDPSDESKPGGAWLPGAVMNI ANCCLQPASHPMKNDSSIAIVWRDETDSSNINQMTLKELRQQVMLVANALDATFVKGDTIAIDMPMTVHSVIIYLAIVLAGYVVVSIADSFAAKEIASRL RISNAKGIFTQDFIVRGGRKFPLYSRVTEAKPHKAIVLPAVGNGVGIQLRKQDLSWDDFLSSANHLERPNVYSPVYQPADSMTNILFSSGTTGDPKAIVW THLSPIRCSSDAWANIDLRVGDVYCWPTNLGWVMGPILLYSCFLTGAALALFHGSPLGREFGKFVQDAGVSVLGTVPSLVKTWKNSNCMDRLNWTKIRCF CSTGETSNVDDDLWLSSKSYYKPIIECCGGTELASSYIQGSLLQPQAFGSFSTVAMTTGLVILDEEGIPYPDDEPCVGEVGLFPLYLGASDRLLNADHHQ VYFEGMPIVNGMQLRRHGDILKRTVGGYFIVQGRADDTMNLGGIKTSSVEIERVCDRADESIVETAAVSVAPVGGGPEVLVIFVVVKKEYKGEAEQLRAK FSKAIQINLNPLFKVGHVKIVEEFPRTASNKVLRRVLRDQMKQQLHGPSKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	0	1
AT1G09820			Pentatricopeptide repeat (PPR-...		Lus10032789 [exp]	1.0	0.9017
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	3.2	0.8994
AT1G78010			tRNA modification GTPase, puta...		Lus10029578 [exp]	3.2	0.8667
AT1G18750	MADS	AGL65, AGL102	AGAMOUS-like 65 (.1.2)		Lus10019089 [exp]	3.7	0.8620
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	3.9	0.8988
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	4.5	0.8843
AT1G78910			Pseudouridine synthase family ...		Lus10033350 [exp]	4.7	0.8660
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	5.3	0.8781
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10036365 [exp]	5.5	0.8618
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10034358 [exp]	6.0	0.8389

Compare expression of checked genes

Lus10012931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.