Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13570 114 / 7e-31 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT1G55310 105 / 8e-28 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT5G18810 66 / 8e-13 SCL28, At-SCL28 SC35-like splicing factor 28 (.1) AT3G55460 64 / 6e-12 SCL30, At-SCL30 SC35-like splicing factor 30 (.1) AT3G08000 45 / 6e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37340 43 / 8e-05 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT1G13690 41 / 0.0003 ATE1 ATPase E1 (.1) AT5G64200 41 / 0.0004 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT1G60650 40 / 0.0008 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029328 [exp] 122 / 2e-34 AT1G55310 160 / 2e-49 SC35-like splicing factor 33 (.1.2.3) Lus10034993 [exp] 94 / 2e-24 ND / Lus10002699 [exp] 71 / 4e-14 AT3G55460 138 / 3e-39 SC35-like splicing factor 30 (.1) Lus10000953 [exp] 71 / 8e-14 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10015146 [exp] 47 / 1e-06 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10031534 [exp] 46 / 2e-06 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003987 [exp] 45 / 2e-05 AT3G53500 255 / 2e-84 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10015039 [exp] 45 / 3e-05 AT3G53500 256 / 8e-85 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10016639 [exp] 42 / 6e-05 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006400 [exp] 141 / 3e-41 AT3G13570 170 / 3e-52 SC35-like splicing factor 30A (.1) Potri.003G218600 [exp] 119 / 8e-33 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1) Potri.016G062500 [exp] 104 / 2e-27 AT3G13570 167 / 9e-52 SC35-like splicing factor 30A (.1) Potri.006G197000 [exp] 101 / 3e-26 AT1G55310 187 / 8e-59 SC35-like splicing factor 33 (.1.2.3) Potri.008G056600 [exp] 78 / 4e-17 AT3G55460 134 / 6e-38 SC35-like splicing factor 30 (.1) Potri.010G203200 [exp] 74 / 1e-15 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1) Potri.008G196700 [exp] 67 / 5e-13 AT5G18810 168 / 8e-52 SC35-like splicing factor 28 (.1) Potri.010G026100 [exp] 66 / 6e-13 AT5G18810 172 / 2e-53 SC35-like splicing factor 28 (.1) Potri.014G157300 [exp] 45 / 6e-06 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G081700 [exp] 43 / 6e-05 AT2G37340 268 / 2e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10012932 pacid=23158517 polypeptide=Lus10012932 locus=Lus10012932.g ID=Lus10012932.BGIv1.0 annot-version=v1.0 ATGAGAGGAAGGAGCTACAGCCCGTCACCCCCAAGGGGCTATGGTAGAAGGGGGAGGAGTCCAAGTCCTAGGGGACGATATGCTGGTCGTGGAGGTGGAA GAGATCAGCCTACTAGTCTTTTAGTTCGCAACCTTAGACATGACTGCAGTGAACCTCGTGGCTTTGGTTTCGTCCAGTTTGTTGATCCTCAAGATGCTAC TGAGGCCAAACATCATATGGACGGCCGAGTTCTTCTTGGTAGGGAGTTAACTGTTGTATTTGCTGAGGAGAATAGGAAGAAACCCAGTGACATGAGGACA AGGGAGCGGGGAAGGGGAGGTGGAGGAGGTCGACCTCGTGATAGGAGGGGGTCCCCTCCTCGATATTCCCGCTCACCACGATACTCTCGTTCGCCTCCAC GTCGTGCAAGATCGCGGTCTCGCAGCCGTGATTATTCCCCACCTGCAAAACAAAGGGACTACTCCAGATCTGTTTCACCCCAAGAGAGAAGGGTCAGCAA AGAGCGAGCATACTCTCGTTCAAGGAGCCGTAGCCTAACACCAAGAGGAGCTCCAATTGAGGGTGTCGTTAGGGGCCGGAGTCCTAGTTGCAGCCGCAGC CCTCCTAGGAGGAGCAGAAGCGCAGCAAATCATGACGAGGACGATTACCCCAGGGAGCGCAACGGGGATCGATCTCCAAGTCCGTGA
AA sequence Show only first row Show all	>Lus10012932 pacid=23158517 polypeptide=Lus10012932 locus=Lus10012932.g ID=Lus10012932.BGIv1.0 annot-version=v1.0 MRGRSYSPSPPRGYGRRGRSPSPRGRYAGRGGGRDQPTSLLVRNLRHDCSEPRGFGFVQFVDPQDATEAKHHMDGRVLLGRELTVVFAEENRKKPSDMRT RERGRGGGGGRPRDRRGSPPRYSRSPRYSRSPPRRARSRSRSRDYSPPAKQRDYSRSVSPQERRVSKERAYSRSRSRSLTPRGAPIEGVVRGRSPSCSRS PPRRSRSAANHDEDDYPRERNGDRSPSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13570		SCL30A, At-SCL3...	SC35-like splicing factor 30A ...		Lus10012932 [exp]	0	1
AT4G25740			RNA binding Plectin/S10 domain...		Lus10027519 [exp]	3.6	0.8477
AT1G31220			Formyl transferase (.1)		Lus10013428 [exp]	19.6	0.8330
AT4G37190			unknown protein		Lus10001001 [exp]	21.5	0.8341
AT3G02080			Ribosomal protein S19e family ...		Lus10010339 [exp]	23.8	0.8322
AT5G49560			Putative methyltransferase fam...		Lus10026017 [exp]	31.7	0.8139
AT5G14880			Potassium transporter family p...		Lus10012888 [exp]	35.4	0.7568
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10008424 [exp]	41.4	0.8173
AT3G02080			Ribosomal protein S19e family ...		Lus10000095 [exp]	45.6	0.7984
AT5G62290			nucleotide-sensitive chloride ...		Lus10038909 [exp]	46.2	0.8152
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10002171 [exp]	52.6	0.8286

Compare expression of checked genes

Lus10012932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.