Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29310 433 / 7e-152 Protein of unknown function (DUF1005) (.1) AT1G10020 305 / 5e-101 Protein of unknown function (DUF1005) (.1) AT3G19680 275 / 8e-89 Protein of unknown function (DUF1005) (.1) AT1G50040 246 / 2e-78 Protein of unknown function (DUF1005) (.1) AT5G17640 216 / 1e-66 Protein of unknown function (DUF1005) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034991 [exp] 657 / 0 AT4G29310 553 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10032807 [exp] 289 / 7e-95 AT1G10020 549 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10012451 [exp] 237 / 2e-74 AT3G19680 349 / 1e-115 Protein of unknown function (DUF1005) (.1) Lus10020509 [exp] 211 / 4e-64 AT3G19680 320 / 1e-103 Protein of unknown function (DUF1005) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112600 [exp] 325 / 3e-109 AT1G10020 607 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.005G150100 [exp] 320 / 3e-107 AT1G10020 563 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.009G084000 [exp] 268 / 1e-86 AT1G10020 389 / 3e-132 Protein of unknown function (DUF1005) (.1) Potri.001G288900 [exp] 259 / 2e-83 AT1G10020 365 / 5e-123 Protein of unknown function (DUF1005) (.1) Potri.013G071000 [exp] 230 / 2e-72 AT5G17640 639 / 0.0 Protein of unknown function (DUF1005) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06219 [flax] [poplar] DUF1005 Protein of unknown function (DUF1005)
Representative CDS sequence Show only first row Show all	>Lus10012933 pacid=23158532 polypeptide=Lus10012933 locus=Lus10012933.g ID=Lus10012933.BGIv1.0 annot-version=v1.0 ATGGGCCGCTCCTGCGGGGTTAGCGGCCGGAAGCTTCTGGGGAAAGTTGAGGTTAGTGTCGATTTGGGGGTAAATCCCGAATCCAGGCGTAGTGTGTTTC AAGATGGGTGGTTAACCCTGCGGGGTCAACCGGCCGGTAAACCGGCGGCCAGGATCCACATGACTGTCCGGTCCGAACCAGAACCGTCCGACCCGGCCCC GCGGTTCGTGTTCCAGTTCGGCGGGGAGCCGGAGTGTAGCCCCGTTGTTTTCCAGATCCAGGGGCATATTCGTCAGCCGCTCTTCAGCTGCAAGTTCAGT GCTGACCGCAATTCACGCACTCGATCTCTTCCCTCGGATTTCAACAACCCATCAAACAGCAGATGGCATACCAAAACACTCTCGGCTCGCGACATAGAAC GAGCCAGCCAGAGGGAAAGAAAAGGATGGATGATAATGATCCACGATCTTTCCGGTTCACCAGTAGCAGCCGCATCAATGATCACACCTTTCGTCCCTTC GCCCGGCTCAGACCGAGTCTCTCGCTCCAATGCAGGGGCATGGCTAATTCTCCGCCCCCATGGTTTTTCCGTCAGCACGTGGAAACCCTGGGGGCGCCTC GAGGCTTGGAGGGAACGAGGGGCAGTCGATGGTTTAGGGTACAAATTCGAGCTCATGACTGAAAGCAAAGGTGGTGGGGGTAGAGTTGTCATTGCGGAAG GCACGATGAGTGTGAAGAAGGGAGGCAGGTTCGGTATCGATGGTAGGACGGTGATGGACTCGGTGTCTAGATCGGCAGTGAAAGGATTTGTGATGGGATC AACGGTGGAAGGTGAGGGGAAAGTTAGTAAGCCAGTGGTTGAGGTGGGAGCTCAGCATGTGATGTGCATGGGAGATGCTGCTCTGTTTGTGGCGTTATCG GCAGCCATTGATCTTAGTATGGATGCTTGTAGGTTGTTCTCACATAAGTTGAGGAAGGAGCTTTGCCATGATGATCAAGACGGTTCCTTTATTTAG
AA sequence Show only first row Show all	>Lus10012933 pacid=23158532 polypeptide=Lus10012933 locus=Lus10012933.g ID=Lus10012933.BGIv1.0 annot-version=v1.0 MGRSCGVSGRKLLGKVEVSVDLGVNPESRRSVFQDGWLTLRGQPAGKPAARIHMTVRSEPEPSDPAPRFVFQFGGEPECSPVVFQIQGHIRQPLFSCKFS ADRNSRTRSLPSDFNNPSNSRWHTKTLSARDIERASQRERKGWMIMIHDLSGSPVAAASMITPFVPSPGSDRVSRSNAGAWLILRPHGFSVSTWKPWGRL EAWRERGAVDGLGYKFELMTESKGGGGRVVIAEGTMSVKKGGRFGIDGRTVMDSVSRSAVKGFVMGSTVEGEGKVSKPVVEVGAQHVMCMGDAALFVALS AAIDLSMDACRLFSHKLRKELCHDDQDGSFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29310			Protein of unknown function (D...		Lus10012933 [exp]	0	1
AT4G29310			Protein of unknown function (D...		Lus10034991 [exp]	1.0	0.8946
AT5G23280	TCP	TCP7	TCP family transcription facto...		Lus10010177 [exp]	2.8	0.8551
AT1G26260	bHLH	CIB5, bHLH076	cryptochrome-interacting basic...		Lus10023562 [exp]	5.7	0.8288
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10040506 [exp]	6.3	0.8283
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10039618 [exp]	6.6	0.8067
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Lus10040448 [exp]	10.0	0.8234
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10040457 [exp]	10.2	0.8159
AT3G10910			RING/U-box superfamily protein...		Lus10022743 [exp]	12.0	0.8091
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10022534 [exp]	13.3	0.7890
AT5G14510			ARM repeat superfamily protein...		Lus10022275 [exp]	14.5	0.8073

Compare expression of checked genes

Lus10012933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.