Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29330 345 / 7e-120 DER1 DERLIN-1 (.1) AT4G04860 145 / 8e-42 DER2.2 DERLIN-2.2 (.1) AT4G21810 142 / 1e-40 DER2.1 DERLIN-2.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034990 [exp] 452 / 4e-162 AT4G29330 347 / 2e-121 DERLIN-1 (.1) Lus10018347 [exp] 150 / 1e-43 AT4G04860 446 / 2e-161 DERLIN-2.2 (.1) Lus10006771 [exp] 144 / 3e-41 AT4G04860 437 / 6e-158 DERLIN-2.2 (.1) Lus10020053 [exp] 144 / 3e-41 AT4G04860 437 / 1e-157 DERLIN-2.2 (.1) Lus10007664 [exp] 105 / 4e-27 AT4G04860 375 / 1e-133 DERLIN-2.2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153000 [exp] 351 / 2e-122 AT4G29330 355 / 7e-125 DERLIN-1 (.1) Potri.004G233200 [exp] 303 / 3e-103 AT4G29330 293 / 4e-100 DERLIN-1 (.1) Potri.004G233100 [exp] 303 / 5e-103 AT4G29330 293 / 8e-100 DERLIN-1 (.1) Potri.011G000900 [exp] 144 / 2e-41 AT4G04860 410 / 5e-147 DERLIN-2.2 (.1) Potri.004G018200 [exp] 140 / 4e-40 AT4G04860 410 / 7e-147 DERLIN-2.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF04511 [flax] [poplar] DER1 Der1-like family
Representative CDS sequence Show only first row Show all	>Lus10012934 pacid=23158568 polypeptide=Lus10012934 locus=Lus10012934.g ID=Lus10012934.BGIv1.0 annot-version=v1.0 ATGCACGTGCACCCACCGCCAGGTGTGACGAAGACCAACTGGAAATCCAGCATCCGTGTTGTTGATCGTGAAGATCGACGAAGACTGTCGCGTCGGAATA GTCGCCGGTCTGTCCACGGTCTTGTGGAAGCAACGGTGATACCGAGGCAATTGAGTTGCACGGAGGCCACGAGGTTGAAGGCCGGCGTTTTTCTCCTCTT TGGAGGTTATCTCATGATAAGGTACTACCTTTCTCTTCCACCTATTACCAAGGCTTATGGAACCTTGTGCCTTGCGGTCACTACACTCTGCAGCCTCGGG CTGGTTGATCCTTGGTATATTGCGTTGCTGTATCGCGAGGCGTTCTCAAGATTTCAGGTGTGGAGGCTTATTACTAATTTCTTCTTTCTTGGGCCATTCT CCGTCAATTTTGGTATTCGTCTCTTGATGATAGCGAGGTACGGTGTTCAACTGGAGCAGGCAACGTTTGCTCGACGGACTGCCGATTTCCTGTGGATGAT GATCTTTGGATGCTTCGCACTTCTGATTCTGTCCGCCATCCCTTTTCTGTGGAACCCTTTCTTGGGCATATCACTTGTGTTCATGCTGCTTTATGTCTGG AGTAGAGAATTTCCAAATGCTGCAATCAACATATACGGCCTTGTGACCATTAAGGCTTTTTACCTGCCATGGACGATGCTGGCTCTGGATGTCATTTTTG GCTCGCCAATTATGCCTGATTTGCTAGGAATCATCGCAGGACATCTCTACTACTTCCTGACCGTGCTGCACCCACTTTCCACTGGAAGGAACTACCTCAA GACTCCAAGATGGGTACAGAAGCTGGTGAGAAGATACAGGATTGGAGCTCCAGCGCTAGTGAGCAACCCTGCACAGCAGGAACCGGAGCCTGGTAGAGGG ACAGCCTTCAGAGGAAGATCGTACAGACTGAGTGACTAG
AA sequence Show only first row Show all	>Lus10012934 pacid=23158568 polypeptide=Lus10012934 locus=Lus10012934.g ID=Lus10012934.BGIv1.0 annot-version=v1.0 MHVHPPPGVTKTNWKSSIRVVDREDRRRLSRRNSRRSVHGLVEATVIPRQLSCTEATRLKAGVFLLFGGYLMIRYYLSLPPITKAYGTLCLAVTTLCSLG LVDPWYIALLYREAFSRFQVWRLITNFFFLGPFSVNFGIRLLMIARYGVQLEQATFARRTADFLWMMIFGCFALLILSAIPFLWNPFLGISLVFMLLYVW SREFPNAAINIYGLVTIKAFYLPWTMLALDVIFGSPIMPDLLGIIAGHLYYFLTVLHPLSTGRNYLKTPRWVQKLVRRYRIGAPALVSNPAQQEPEPGRG TAFRGRSYRLSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29330		DER1	DERLIN-1 (.1)		Lus10012934 [exp]	0	1
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	1.7	0.9282
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10037923 [exp]	6.2	0.9184
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	8.5	0.9212
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	11.5	0.9138
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019328 [exp]	13.6	0.9119
AT1G73160			UDP-Glycosyltransferase superf...		Lus10014499 [exp]	15.6	0.8937
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	17.4	0.9151
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	19.0	0.9142
AT5G59613			unknown protein		Lus10005899 [exp]	19.4	0.9122
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Lus10009246 [exp]	23.3	0.8954

Compare expression of checked genes

Lus10012934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.