Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29340 204 / 3e-69 PRF4 profilin 4 (.1) AT2G19770 193 / 8e-65 PRF5 profilin 5 (.1) AT4G29350 174 / 4e-57 PRF2, PFN2, PRO2 profilin 2 (.1) AT2G19760 163 / 6e-53 PRF1, PFN1 profilin 1 (.1) AT5G56600 159 / 8e-51 PRF3, PFN3 profilin 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034989 [exp] 231 / 8e-80 AT4G29340 234 / 6e-81 profilin 4 (.1) Lus10043041 [exp] 227 / 3e-78 AT4G29340 239 / 9e-83 profilin 4 (.1) Lus10011139 [exp] 225 / 2e-77 AT4G29340 238 / 1e-82 profilin 4 (.1) Lus10037591 [exp] 193 / 9e-65 AT2G19770 231 / 6e-80 profilin 5 (.1) Lus10034988 [exp] 192 / 2e-64 AT4G29340 219 / 3e-75 profilin 4 (.1) Lus10006846 [exp] 191 / 5e-64 AT2G19770 229 / 5e-79 profilin 5 (.1) Lus10012936 [exp] 188 / 8e-63 AT4G29350 223 / 2e-76 profilin 2 (.1) Lus10011138 [exp] 181 / 6e-60 AT2G19760 225 / 2e-77 profilin 1 (.1) Lus10043040 [exp] 180 / 2e-59 AT5G56600 223 / 1e-76 profilin 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190800 [exp] 195 / 1e-65 AT2G19760 196 / 8e-66 profilin 1 (.1) Potri.003G047700 [exp] 193 / 9e-65 AT4G29340 224 / 5e-77 profilin 4 (.1) Potri.018G057600 [exp] 188 / 9e-63 AT4G29340 188 / 5e-63 profilin 4 (.1) Potri.006G235200 [exp] 187 / 1e-62 AT4G29340 216 / 1e-73 profilin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF00235 [flax] [poplar] Profilin Profilin
Representative CDS sequence Show only first row Show all	>Lus10012935 pacid=23158553 polypeptide=Lus10012935 locus=Lus10012935.g ID=Lus10012935.BGIv1.0 annot-version=v1.0 ATGTCGTGGCAGACATATGTGGACGAGCACTTGATGTGCGAAATCGAAGGTCAACAAGGTCAACATCTTCAATCTGCTGCCATCTTCGGCCATGATGGCA ACGTCTGGGCTCAGAGCTCTGCATTTCCTCAGTTCACGGGAACAGAGATGAGTGACATAATGAAGGATTTTGATGAACCGGGACATCTTGCCCCTACTGG ATTACACGTTGCTGGTGCCAAGTATATGGTTATTCAGGGTGAGCCTGGTGCTGTTATTCGCGGCAAAAAGGGTGCTGGAGGGATCACCATTAAAAAGACA GGGCAGGCACTGGTTATTGGAATTTATGAAGAACCAGTGACTCCTGGGCAATGCAACATGGTTGTTGAAAGGTTGGGAGATTACCTCCTTGACCAAGGCA TGTAG
AA sequence Show only first row Show all	>Lus10012935 pacid=23158553 polypeptide=Lus10012935 locus=Lus10012935.g ID=Lus10012935.BGIv1.0 annot-version=v1.0 MSWQTYVDEHLMCEIEGQQGQHLQSAAIFGHDGNVWAQSSAFPQFTGTEMSDIMKDFDEPGHLAPTGLHVAGAKYMVIQGEPGAVIRGKKGAGGITIKKT GQALVIGIYEEPVTPGQCNMVVERLGDYLLDQGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	0	1
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	1.4	1.0000
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	2.0	1.0000
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	2.2	0.9711
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	2.4	0.9979
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	2.8	0.9963
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	3.5	0.9695
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	3.7	0.9579
AT3G14470			NB-ARC domain-containing disea...		Lus10032781 [exp]	4.0	0.9417
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028003 [exp]	4.5	0.9197
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020333 [exp]	4.7	0.9134

Compare expression of checked genes

Lus10012935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.