Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29350 223 / 2e-76 PRF2, PFN2, PRO2 profilin 2 (.1) AT2G19760 221 / 4e-76 PRF1, PFN1 profilin 1 (.1) AT5G56600 217 / 7e-74 PRF3, PFN3 profilin 3 (.1.2) AT2G19770 215 / 1e-73 PRF5 profilin 5 (.1) AT4G29340 214 / 5e-73 PRF4 profilin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034988 [exp] 262 / 5e-92 AT4G29340 219 / 3e-75 profilin 4 (.1) Lus10043040 [exp] 253 / 2e-88 AT5G56600 223 / 1e-76 profilin 3 (.1.2) Lus10011138 [exp] 253 / 2e-88 AT2G19760 225 / 2e-77 profilin 1 (.1) Lus10037591 [exp] 233 / 2e-80 AT2G19770 231 / 6e-80 profilin 5 (.1) Lus10006846 [exp] 231 / 1e-79 AT2G19770 229 / 5e-79 profilin 5 (.1) Lus10011139 [exp] 221 / 5e-76 AT4G29340 238 / 1e-82 profilin 4 (.1) Lus10043041 [exp] 221 / 7e-76 AT4G29340 239 / 9e-83 profilin 4 (.1) Lus10034989 [exp] 221 / 7e-76 AT4G29340 234 / 6e-81 profilin 4 (.1) Lus10012935 [exp] 216 / 8e-74 AT4G29340 235 / 2e-81 profilin 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190800 [exp] 246 / 5e-86 AT2G19760 196 / 8e-66 profilin 1 (.1) Potri.003G047700 [exp] 240 / 2e-83 AT4G29340 224 / 5e-77 profilin 4 (.1) Potri.018G057600 [exp] 231 / 7e-80 AT4G29340 188 / 5e-63 profilin 4 (.1) Potri.006G235200 [exp] 228 / 7e-79 AT4G29340 216 / 1e-73 profilin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF00235 [flax] [poplar] Profilin Profilin
Representative CDS sequence Show only first row Show all	>Lus10012936 pacid=23158565 polypeptide=Lus10012936 locus=Lus10012936.g ID=Lus10012936.BGIv1.0 annot-version=v1.0 ATGTCGTGGCAGACCTACGTTGACGACCACCTCTTGTGCGAACAAGAGGGCAACCACCTCTCTGCTGCCGCCATCATCGGCCATGACGGCAGCGTTTGGG CCCAGAGCACCACCTTCCCTCAGTTGAAGCCTGAAGAAGTTAGTGGTATTATGAAGGACTTCGATGAGCCCGGCTCACTTGCACCGACTGGGTTGTACCT TGGAGGCACCAAGTATATGGTGATTCAGGGGGAGTCTGGAGCTGTCATTCGAGGCAAGAAGGGAGCTGGTGGGGTGACGATTAAGAAGACTAGCCAGGCC TTGATCATAGGTATATATGATGAGCCAATGACTCCAGGGCAGTGCAACATTGTGGTCGAAAGGCTTGGGGATTATCTCATCGACCAGGGACTTTAA
AA sequence Show only first row Show all	>Lus10012936 pacid=23158565 polypeptide=Lus10012936 locus=Lus10012936.g ID=Lus10012936.BGIv1.0 annot-version=v1.0 MSWQTYVDDHLLCEQEGNHLSAAAIIGHDGSVWAQSTTFPQLKPEEVSGIMKDFDEPGSLAPTGLYLGGTKYMVIQGESGAVIRGKKGAGGVTIKKTSQA LIIGIYDEPMTPGQCNIVVERLGDYLIDQGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29350		PRF2, PFN2, PRO...	profilin 2 (.1)		Lus10012936 [exp]	0	1
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10016414 [exp]	1.0	0.8572
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10016948 [exp]	2.2	0.8198
AT1G11360			Adenine nucleotide alpha hydro...		Lus10039730 [exp]	2.4	0.8455
					Lus10017454 [exp]	4.6	0.8314
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10034424 [exp]	10.4	0.7805
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000347 [exp]	13.0	0.7720
AT3G05500			Rubber elongation factor prote...		Lus10029892 [exp]	13.7	0.7709
AT5G11000			Plant protein of unknown funct...		Lus10041022 [exp]	13.8	0.7803
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10025319 [exp]	14.0	0.7841
AT3G52710			unknown protein		Lus10022708 [exp]	14.1	0.7795

Compare expression of checked genes

Lus10012936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.