Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56590 587 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 520 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G01630 345 / 1e-114 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 337 / 3e-112 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 330 / 3e-109 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 324 / 3e-106 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 321 / 4e-105 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 315 / 3e-103 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 308 / 3e-100 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 307 / 6e-100 O-Glycosyl hydrolases family 17 protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034987 [exp] 665 / 0 AT5G56590 562 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10007929 [exp] 332 / 5e-110 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10013465 [exp] 331 / 3e-109 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 324 / 6e-107 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 319 / 5e-105 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004044 [exp] 319 / 3e-104 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002295 [exp] 316 / 3e-103 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039179 [exp] 310 / 1e-100 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10031456 [exp] 309 / 4e-100 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068600 [exp] 659 / 0 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 329 / 2e-108 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G130200 [exp] 326 / 4e-107 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G108500 [exp] 325 / 1e-106 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.014G158400 [exp] 319 / 5e-105 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G133200 [exp] 320 / 1e-104 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G007300 [exp] 311 / 1e-101 AT4G29360 339 / 1e-111 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G261800 [exp] 310 / 2e-101 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 310 / 3e-101 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G010500 [exp] 308 / 5e-100 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10012937 pacid=23158581 polypeptide=Lus10012937 locus=Lus10012937.g ID=Lus10012937.BGIv1.0 annot-version=v1.0 ATGATCGGTATAACAAACTCCGATTTGCTGCCCTTCTCCCAGTTCCAATCCAACGCAGATACATGGCTAAAAAACAGCATACTCCCTTACTACCCAGCCA CAAAAATAACATACATTACTGTGGGTGCTGAAGTTACAGATTCCCCCAGCAATGTTTCAGCTTTAGTGGTACCAGCTATGCACAACATCCTCACATCCTT GAAAAAAGCCGGTCTGCACAAAAGGATCAAAGTCTCGACGACTCATTCTCTTGGAGTGTTGTCTCGATCTTTCCCTCCTTCCGCTGGAGCATTCAGCAGC AACTATGCATCTTTCCTGAAACCAATGTTGGAATTCCTAGCTGAAAATCAATCCCCTTTCATGATCGATATCTACCCTTACTATGCTTATAGGGATTCTC CGAATAATGTCTCCTTGGATTATGCTCTATTCCAATCTTCATCCGAAGTCATTGACCCGAACACCGGTTTGCTCTACACTAACATGTTCGATGCTCAGAT TGATGCACTTTACTTTGCCCTCATGGCTCTCAACTTCAGAACTATCAAGGTTATGGTCACCGAGACTGGCTGGCCATCAAAAGGTTCGCCTAAAGAGACG GCTGCAACTCCTGATAATTCTCAGACGTACAATGCCAACTTGATTCGCCATGTCATTAACAACACGGGCACTCCGGCAAAGCCGGGAGAGGTTGTGGATA CATACATCTTCTCGCTGTTTAACGAGAACAGGAAGCCCGGGATGGAATCCGAAAGGAACTGGGGTTTGTTTTATCCAGATCAGACTAGCGTCTATAATCT GGATTTGACTGGTAGAGGTGCAAGTATTCTTGATATGCCTTCGAGCTCGAATGGTAGTGCTAGCTTCAACAACTCAACAACAGCCAGTTGGTGCATTGCT TCCGGTAATGCTACGCAGCGGGACTTACAGAATGCACTTGACTGGGCGTGTGGTACAGGGAATGTGGATTGCTCGCCGATTCTACCTAGTCAGCCTTGTT TTGAGCCGGATGCTTTGGTTTCTCATGCATCTTACGCGTTCAATGTTTACTACCAGCAAAATGGAGCAACTGATATTGCTTGCAGTTTTGGAGGCACCGG TGTCAGAGTCGACAAGGATCCCAGTTATGACAAATGCCTGTATATGACAGCTGGGGGTAACAAGACAGGAGCTGGTGGTAATACTACGGCAATGGCTTCT TCCTCCTCCTCGAAGAGCTCATCGTCTTCAAGGAGTATGAGAATGAGAATGAAGTGGATGTATAGCCTGATTCTTATGAGCTATGTTCTTGGTCGTCTTT GA
AA sequence Show only first row Show all	>Lus10012937 pacid=23158581 polypeptide=Lus10012937 locus=Lus10012937.g ID=Lus10012937.BGIv1.0 annot-version=v1.0 MIGITNSDLLPFSQFQSNADTWLKNSILPYYPATKITYITVGAEVTDSPSNVSALVVPAMHNILTSLKKAGLHKRIKVSTTHSLGVLSRSFPPSAGAFSS NYASFLKPMLEFLAENQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDALYFALMALNFRTIKVMVTETGWPSKGSPKET AATPDNSQTYNANLIRHVINNTGTPAKPGEVVDTYIFSLFNENRKPGMESERNWGLFYPDQTSVYNLDLTGRGASILDMPSSSNGSASFNNSTTASWCIA SGNATQRDLQNALDWACGTGNVDCSPILPSQPCFEPDALVSHASYAFNVYYQQNGATDIACSFGGTGVRVDKDPSYDKCLYMTAGGNKTGAGGNTTAMAS SSSSKSSSSSRSMRMRMKWMYSLILMSYVLGRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	0	1
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	1.0	0.9553
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	1.4	0.9337
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10007132 [exp]	2.4	0.9280
AT1G31040			PLATZ transcription factor fam...		Lus10036226 [exp]	4.2	0.8879
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10036517 [exp]	4.9	0.9043
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10002858 [exp]	5.3	0.8871
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021302 [exp]	5.7	0.8795
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	5.7	0.8867
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10015900 [exp]	7.9	0.8857
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	9.2	0.8771

Compare expression of checked genes

Lus10012937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.