Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56580 528 / 0 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT4G29810 369 / 3e-127 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT4G26070 338 / 6e-115 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT5G40440 211 / 1e-63 ATMKK3 mitogen-activated protein kinase kinase 3 (.1) AT1G51660 179 / 7e-53 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT3G21220 177 / 1e-52 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G73500 154 / 4e-44 ATMKK9 MAP kinase kinase 9 (.1) AT1G18350 153 / 7e-44 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT1G32320 142 / 7e-40 ATMKK10 MAP kinase kinase 10 (.1) AT3G06230 130 / 4e-35 ATMKK8 MAP kinase kinase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034986 [exp] 595 / 0 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10027623 [exp] 372 / 8e-128 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10011945 [exp] 328 / 2e-109 AT4G29810 407 / 4e-140 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10001137 [exp] 204 / 7e-62 AT5G40440 711 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10022265 [exp] 202 / 3e-60 AT5G40440 861 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10035764 [exp] 171 / 6e-50 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10001081 [exp] 134 / 2e-37 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10037070 [exp] 127 / 6e-32 AT1G69220 909 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036915 [exp] 126 / 1e-31 AT1G69220 917 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068500 [exp] 547 / 0 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.018G050800 [exp] 385 / 1e-133 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.006G146500 [exp] 374 / 2e-129 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.001G345500 [exp] 206 / 6e-62 AT5G40440 851 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Potri.008G009800 [exp] 180 / 2e-53 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.010G249300 [exp] 176 / 4e-52 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.015G030700 [exp] 169 / 1e-49 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.012G043200 [exp] 156 / 9e-45 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.010G049500 [exp] 143 / 9e-40 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.008G183700 [exp] 135 / 5e-37 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012938 pacid=23158560 polypeptide=Lus10012938 locus=Lus10012938.g ID=Lus10012938.BGIv1.0 annot-version=v1.0 ATGAAAATCAAGACGCCATTGCAGCAGCTGAAGCTCTCTGTTCCAGCTCAAGAAACTCTAATCACATCTTTCCTGACAGCAAGTGGTACATTTCACGACG GGGATTTGCTGTTGAATCAGAAAGGTCTGCGGCTTATTTCCGAAGAGAAGGAATCACAGCCATCAGAGAGCAAGGAGGTTGATATAGAGTTTTCATTAGA AGATCTTGAAACAATCAAAGTGATTGGAAAGGGCAGCGGAGGTGTTGTCCAACTTGTTCGACATAAATGGGTTGGGACTTTGTTTGCCTTGAAGGTCATC CAGATGAACATACAAGAGGAAATTCGTAAACAGATTGTACAGGAGCTGAAAATAAACAAAGGCTCGCAGTGTCCACAAGTGGTTATCTGTCACCATTCAT TTTATCACAATGGAGCTTTTTCACTTGTGTTAGAATACATGGACCGCGGCTCTCTTGCAGATGTGATCAGACAAGTGAAAACTATTCTGGAACCTTATCT GGCAGTTGTATGTAAACAGGTTTTGCAAGGTCTTGTGTATCTCCACCATGAAAGACACGTTATACATAGAGACATTAAGCCTTCAAACCTTCTAGTAAAC CACAAGGGGGAAGTGAAGATAACTGATTTTGGTGTGAGTGCTATGCTAGCAAACTCCATGGGTCAGCGGGATACATTTGTTGGAACTTACAACTACATGT CGCCAGAGCGAATTAGCGGCAGCACCTATGATTACAGCAGTGATGTTTGGAGCTTGGGATTGGTAGTGCTTGAATGTGCTATTGGACGCTTTCCCTATAT GAGGTCAGAAGATGAACAGGAGTGGCCTAGTTTTTACGAGCTACTGGAAGCCATCGTAGATAGTCCTCCACCATCTGCCCCTCCAGACCAATTTTCTCCT GAATTCTGTTCCTTCGTATCAGCCTGCATACAAAAGGAGCCAAGCGACAGGTCATCCTCATTGGATCTTTTGAGCCATCCTTTCATCAAAAAGTTCGAAG ACAAAGATATCGAGCTTGGAATTTTGCTTAGTAGCTTGGAACCCCCAGTGAATTGCCCAAGATAA
AA sequence Show only first row Show all	>Lus10012938 pacid=23158560 polypeptide=Lus10012938 locus=Lus10012938.g ID=Lus10012938.BGIv1.0 annot-version=v1.0 MKIKTPLQQLKLSVPAQETLITSFLTASGTFHDGDLLLNQKGLRLISEEKESQPSESKEVDIEFSLEDLETIKVIGKGSGGVVQLVRHKWVGTLFALKVI QMNIQEEIRKQIVQELKINKGSQCPQVVICHHSFYHNGAFSLVLEYMDRGSLADVIRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVN HKGEVKITDFGVSAMLANSMGQRDTFVGTYNYMSPERISGSTYDYSSDVWSLGLVVLECAIGRFPYMRSEDEQEWPSFYELLEAIVDSPPPSAPPDQFSP EFCSFVSACIQKEPSDRSSSLDLLSHPFIKKFEDKDIELGILLSSLEPPVNCPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Lus10012938 [exp]	0	1
AT1G18500		MAML-4, IPMS1	ISOPROPYLMALATE SYNTHASE 1, me...		Lus10019574 [exp]	11.4	0.9211
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10031622 [exp]	17.3	0.9156
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10021088 [exp]	17.7	0.9187
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10012946 [exp]	27.1	0.9184
					Lus10026740 [exp]	30.1	0.9061
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016407 [exp]	32.0	0.8816
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	34.8	0.8776
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031188 [exp]	35.3	0.8972
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10030534 [exp]	39.9	0.9005
AT3G09950			unknown protein		Lus10039065 [exp]	41.4	0.8812

Compare expression of checked genes

Lus10012938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.